Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq26467 136 5e-27 seq311 136 5e-27 seq105 123 3e-23 seq222 102 1e-16 >seq26467 Length=4180 Score = 136 bits (150), Expect = 5e-27 Identities = 110/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| |||||||| || || |||||||||||||| | || Sbjct 2944 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 2885 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||| ||||| ||||||||||| ||||| |||||||| || | | ||||||| Sbjct 2884 TCATTATTTCCAAGAATCTGAGCAGTTGAAGCAGTAGGCATAGGGGCAATAAGTAAACTA 2825 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 2824 TTTCTTATACCAT 2812 >seq311 Length=2724376 Score = 136 bits (150), Expect = 5e-27 Identities = 110/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| |||||||| || || |||||||||||||| | || Sbjct 2492909 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 2492850 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||| ||||| ||||||||||| ||||| |||||||| || | | ||||||| Sbjct 2492849 TCATTATTTCCAAGAATCTGAGCAGTTGAAGCAGTAGGCATAGGGGCAATAAGTAAACTA 2492790 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 2492789 TTTCTTATACCAT 2492777 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| ||||||||||| || | || || || |||| | | | Sbjct 2478015 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGT 2477956 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| |||||||| | ||||| ||||||| || Sbjct 2477955 TCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATATCTAAATGCCAAGGC 2477896 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 2477895 TCCAGGTAAATAGC 2477882 Score = 86.0 bits (94), Expect = 9e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566 ||||||| || ||||| ||||||||||| ||||||| |||||||| ||||||||||| Sbjct 2478480 ATATAGCTTCTCAAATTCTTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACA 2478421 Query 69567 CATCAATGACCA 69578 |||||| ||||| Sbjct 2478420 CATCAAAGACCA 2478409 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 69989 TAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGAT 70048 |||| || ||||| || | || ||||| || || || ||||| | |||||||| || | Sbjct 2474118 TAGTGCCAGCATTGAAAAGAGTGGGAGAGGCATGGGTAAACCACCTCTCAGAAAGAAGGT 2474059 Query 70049 TGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCA 70108 |||| ||||||||||| | ||| ||||| | ||||| || | | || | ||||| Sbjct 2474058 TGTACGTTTCAATAGCAGCTTCAATATCTTCTTCGTGAATCCCCACAGATACCCTCATCA 2473999 Query 70109 ACATATGCTGAGGTCGTTC 70127 ||||||| || |||| ||| Sbjct 2473998 ACATATGTTGTGGTCTTTC 2473980 >seq105 Length=3566936 Score = 123 bits (136), Expect = 3e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||| ||||| |||||||| || || || || | Sbjct 2109091 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCCCGTTTCT 2109032 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| |||||||||||||| ||||| || || ||||| | Sbjct 2109031 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCAAAAG 2108972 Query 39759 CAACAA 39764 | |||| Sbjct 2108971 CGACAA 2108966 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||||| ||| || || || | |||||||||||||| ||||| |||||||| || || Sbjct 2108096 ATCTTTAATATAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 2108037 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 || || || ||||| ||||| | ||||| || || || || ||| Sbjct 2108036 AATTTGGAAGCCGTAGAAACAGCGGGCTTCTGTGATCTGAACTTCT 2107991 >seq222 Length=2514393 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||||||||| ||||| | || || Sbjct 507918 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 507977 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 | ||| ||||| |||||||| ||||| || ||||| || ||||| || || || || || Sbjct 507978 AACCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCCACAGCAGCGAAGGCC 508037 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 508038 ACCACTCTTTCCCC 508051 Score = 86.0 bits (94), Expect = 9e-12 Identities = 93/123 (76%), Gaps = 3/123 (2%) Strand=Plus/Plus Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 |||||||| || |||||||||||||| ||||||||||| || |||||||| || || | Sbjct 513666 AAAATCTTACC---AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 513722 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106 || |||||||| || ||||| | | | | || ||||||| | || ||| |||| Sbjct 513723 TGTGAGAGATAAAATACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 513782 Query 40107 ATA 40109 ||| Sbjct 513783 ATA 513785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686598883922160