Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq222 105 5e-18 seq105 98.7 8e-16 >seq222 Length=2514393 Score = 105 bits (116), Expect = 5e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||| || | || || || || | ||||||||| |||||||| || ||||| ||||| Sbjct 508051 GGGGAAAGAGTGGTGGCCTTCGCTGCTGTGGAAGGAATTTTCTTCTCGGGATCCTTTGCT 507992 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 || ||||| |||||||||||| ||||| | |||||||| | || ||||| ||||| | Sbjct 507991 GCTATATTCTGGTTAAAGAAAAGAGGTCTTATGCCTGGACTCACTTTTTCCAATGAACTC 507932 Query 44243 ATAAGTCGTGATGAAG 44258 || || | ||||||| Sbjct 507931 ATCAGCAGAGATGAAG 507916 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || || |||||||||||||||||||| || ||||| |||||||| || ||||| | Sbjct 501548 AAAATCCCTTCGATTTTATGGAAAATATTTCTTTAGAAGGAAAAACAAATTTCTTTGAGA 501489 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 |||| ||| ||| |||||||| | ||||| ||| Sbjct 501488 AACGAGTTTCAGAGTATCAGCGTTTTGGCGTGATG 501454 >seq105 Length=3566936 Score = 98.7 bits (108), Expect = 8e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 |||||| ||||||||||| | ||||||| || ||||| || || || ||||||||| Sbjct 2107980 CGGTTTAGCCAAGAAGTTCAGATCACAGAAGCCCGCTGTTTCTACGGCTTCCAAATTGCC 2108039 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| || ||||| |||||||| ||||| || || || || || || |||||| Sbjct 2108040 ATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACCTATATTAAAGAT 2108096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397281160844470