Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq311 82.4 6e-11 seq44 82.4 6e-11 >seq311 Length=2724376 Score = 82.4 bits (90), Expect = 6e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 131030 GCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTT 131089 ||||| || ||| |||||||| ||||| |||||||||||||| ||||| ||||| Sbjct 2482627 GCCAGATCACAGCTGGCTTCCAAGGCTCCATAATAAATGGTTTCAAAGATTTGCTTATTC 2482568 Query 131090 AATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGA 131149 ||| | || | ||||| ||||| | |||| | ||||||||| ||||| ||| Sbjct 2482567 AATAACTGGGCCTCTGGACTCTCAAAAGGATACCTCATCAGAATAAAAGCATCTGCCAGA 2482508 Query 131150 CCCTGTATCCCAA 131162 || |||| ||||| Sbjct 2482507 CCTTGTACCCCAA 2482495 >seq44 Length=10323257 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 || || |||| ||| | || || ||||| ||||| ||||| || | |||| | Sbjct 7626801 CGAAAGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCA 7626860 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | ||||| | ||| || || || || | ||| || ||| Sbjct 7626861 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATACCTTCCTTA 7626920 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| |||| | || | ||||| | | || || || || || || Sbjct 7626921 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCCAGGGTGATG 7626980 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| || ||||| ||||||||||| Sbjct 7626981 GTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 7627015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424747473216528