Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq311 91.5 2e-13 seq105 82.4 9e-11 >seq311 Length=2724376 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 104888 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGAC 104947 ||| | || ||| | ||||||| || ||||| ||||| ||||||||||| |||||||| Sbjct 2479225 TGGTACGCCATTATTGAGTCTCAGACTGAGACAGGTACCCCATACATGCTCTACAAAGAT 2479284 Query 104948 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGT 105007 ||||||| | ||||| || || |||| |||| ||||| | ||| || ||| Sbjct 2479285 TCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACAATCAAATGCAGCAACCTGTGT 2479344 Query 105008 ACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 |||||||| | || | ||| |||||||||| Sbjct 2479345 ACAGAAATAGTAGAGTATACTAGCAAAGATGAG 2479377 >seq105 Length=3566936 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 95170 AATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAAAG 95229 ||||||||||||||||||||||||||| || || ||||| || |||||||| || ||| Sbjct 2110391 AATCCATTTGACTTCATGGAGAACATTTCACTGGAAGGGAAAACTAACTTCTTTGAGAAG 2110450 Query 95230 AGGGTTGGGGACTATGGCAAGATGG 95254 || || || || ||| ||||||| Sbjct 2110451 AGAGTGGGCGAGTATCAGAAGATGG 2110475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582997647308560