Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq44 123 2e-23 seq391 89.7 4e-13 seq102 86.0 5e-12 seq12 86.0 5e-12 >seq44 Length=10323257 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || ||||||||||| Sbjct 7626787 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGT 7626728 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || || || || |||||||| || || || || Sbjct 7626727 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGACCAG 7626668 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| ||||||||| Sbjct 7626667 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 7626608 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| || ||||||||| | || |||| | ||| || |||||||| Sbjct 7626607 ATTCAGAAAGAGTCGACCCTGCACCTGGTCCTACGTCTGAGGGGTGGC 7626560 Score = 116 bits (128), Expect = 3e-21 Identities = 178/252 (71%), Gaps = 5/252 (2%) Strand=Plus/Minus Query 26971 TTTTTAA--TTTATACGCCA---TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTAT 27025 ||||||| |||||| | || |||| || || || || || |||||||||||| | || Sbjct 7627037 TTTTTAAATTTTATAGGTCAAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCAT 7626978 Query 27026 TACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAA 27085 || || || ||||| || ||| | ||||||| || || || || || || || Sbjct 7626977 CACCCTGGAGGTGGAGCCAAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAA 7626918 Query 27086 AGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAG 27145 ||||| || || || || || ||| | | || | || ||||| || ||||||| | Sbjct 7626917 GGAAGGTATCCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGG 7626858 Query 27146 TTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTT 27205 || |||| |||||||||||||| || ||||||||| | ||| |||| || ||| | Sbjct 7626857 CCGCACTCTTTCTGATTACAACATTCAGAAAGAGTCGACCCTGCATCTGGTCTTTCGTCT 7626798 Query 27206 GCGGGGTGGCAT 27217 | ||||||| || Sbjct 7626797 GAGGGGTGGTAT 7626786 >seq391 Length=1629883 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || ||||| |||||| | |||||||| || ||||| || Sbjct 1120465 ATGCAGATTTTTGTGAAAACCCTTACCGGGAAGTCTTTCACTCTTGAGGTTGAACCCTCG 1120524 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 | | || || | || || || || || || || ||||| | || || ||||| Sbjct 1120525 GTTACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAACTCCTCCTGATCAG 1120584 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | | | || | ||| ||| |||||||| | ||| | || || |||| | Sbjct 1120585 CAAAGACTGACCTTTGCTGACAAGCAACTGGAAGACGGACGTACCTTGTCTGACTACAGC 1120644 Query 27168 ATTCAAAAGGAGTCGAC 27184 |||||||||||||| || Sbjct 1120645 ATTCAAAAGGAGTCCAC 1120661 >seq102 Length=6558185 Score = 86.0 bits (94), Expect = 5e-12 Identities = 156/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||| |||||| | ||||| | | || || || Sbjct 2020283 ATGCAAATCTTCGTGAAGACACTGATGGGCAAGACCATTACACACAAGGTCGAGCCCAGT 2020224 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | | ||| | |||||| ||||| | |||||| |||||||| |||| || | Sbjct 2020223 AACACCACTGATAACGTCAAAGCTAAAATCCGAGACAAGGAAGGCATCCCACATGACCTG 2020164 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| || | || | || |||||||| |||| |||| | || | || || |||||| Sbjct 2020163 CAGTGTCTGATTTTTGCGGGCAAACAGCTGGAGGACAATCGCACTCTCTCAGACTACAAC 2020104 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || ||||| || | || ||||| | ||| || ||||||| Sbjct 2020103 ATTCAGAAAGAGTCCACTCTGCACTTGGTGCTTCGTCTG-GGGGTGG 2020058 >seq12 Length=16976894 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||| |||||| | || || | || || | || Sbjct 6395597 ATGCAAATCTTTGTGAAGACCCTGATGGGCAAGACCATCACACACGAGGTCCAGCCCAGT 6395656 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| |||| |||||||| || ||||| ||||| || || Sbjct 6395657 GACACCATCGAAAACGTCAAAGCTAAAACCCAAGACAAGGAGGGCATCCCACCTGACCAG 6395716 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCG-ACCGTTTCCGATTACAA 27166 |||||| | | | ||||||||||| ||| ||| | || || || || || || Sbjct 6395717 CAGCGTCTGAGTTTTGCCGGCAAACAGCTGG-AGAATGGCCGCACTCCCTCAGACTATAA 6395775 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| ||| | || ||||| | ||| || |||||||||| Sbjct 6395776 TATCCAGAAAGAGTCCACCCTGCACTTGGTGCTACGTCTGTGGGGTGGCAT 6395826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434722175690880