Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq553 158 1e-33 seq55 141 8e-29 seq269 134 1e-26 seq54 102 7e-17 >seq553 Length=933399 Score = 158 bits (174), Expect = 1e-33 Identities = 356/530 (67%), Gaps = 5/530 (1%) Strand=Plus/Plus Query 34088 CCGCATGGGGAGTGGCAGTATCTGTATCAGGTGGCGCGGATCCTCAGGGAGGGCTACCGG 34147 || || |||||| ||||| ||| ||| | | || |||||||| |||| | Sbjct 151798 CCCCACGGGGAGCTACAGTACCTGGGGCAGATTGAGCATATCCTCAGCTGCGGCTTTGGA 151857 Query 34148 AAGGGGGACCGGACCGGG-ACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAA 34206 |||| |||| |||||| || |||||||| || |||||| || |||| | |||| Sbjct 151858 AAGGATGACC--ACCGGGCACCGGGACCCTGTCGGTGTTCCACAAGCAGGTGCACTACAG 151915 Query 34207 CCTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGA 34266 ||| | | |||||||| |||||||| | |||||||| | ||||||||| || | || Sbjct 151916 CCTGAGAGATGAATTTCCTCTGCTGACACCCAAACGTGTATCCTGGAAGGGTGTTTTGGA 151975 Query 34267 GGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGT 34326 |||| |||||||||| | || ||| || | || || || |||||| | || Sbjct 151976 GGAGTTGCTGTGGTTTATCGAGGAATACACAAATGCTAAAGAACTGTCGTCCAAAGAAGT 152035 Query 34327 GAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCG 34386 || ||||||| || | | ||| ||||| ||||| | ||| ||| | | | Sbjct 152036 GAGATTCTGGGATGCCAATGAGTCCTACGACTTCCTGGAAGGCCTGGGATTCTCCTGCAG 152095 Query 34387 GGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || || ||||| |||| | | || || |||||||| || |||||||| || || Sbjct 152096 AAAAGAAGGGGACTTAGGCCTAATTAATGGCTTTCAGTGGAGGCATTTTGGGGCAGAATA 152155 Query 34447 TCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGA 34506 | | || | | ||||| || || |||| ||||| ||||| | ||||| || Sbjct 152156 CAAAGATATAGATTCAGGTTATTCAGGTCAAGGAGTAGACCAACTGCAAAAGGTGATTGA 152215 Query 34507 CACCTT-GAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGG 34565 || || ||| | |||| |||||||||||| ||| | || |||| | ||| | ||| | Sbjct 152216 CATGTTCGAAACC-AACCGTGATGACAGAAGAATCATCCTGAGCGCTTAGAATCGGAAAG 152274 Query 34566 ATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTAC 34615 ||| ||| | | || || | |||||| |||| ||||| |||||| Sbjct 152275 ATCATCCTTTCACAGCCCTACTTTGGTGCCATGCCCTTTGCCAGTTCTAC 152324 Score = 158 bits (174), Expect = 1e-33 Identities = 356/530 (67%), Gaps = 5/530 (1%) Strand=Plus/Minus Query 6730 GTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTT 6789 |||||| ||||| |||| |||||| | || || | | ||| |||| ||| | || Sbjct 152324 GTAGAACTGGCAAAGGGCATGGCACCAAAGTAGGGCTGTGAAAGGATGATCTTTCCGATT 152265 Query 6790 CCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTC-AAGGTGTCGATCACGT 6848 | | |||| || | ||| |||||||||||| |||| | ||| || |||| ||||| | Sbjct 152264 CTAAGCGCTCAGGATGATTCTTCTGTCATCACGGTT-GGTTTCGAACATGTCAATCACCT 152206 Query 6849 ACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCC 6908 ||||| ||||| |||| || || ||||| | | || | | || || |||| Sbjct 152205 TTTGCAGTTGGTCTACTCCTTGACCTGAATAACCTGAATCTATATCTTTGTATTCTGCCC 152146 Query 6909 CAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGA 6968 |||| || |||||||| || || | | |||| ||||| || || | | | | || Sbjct 152145 CAAAATGCCTCCACTGAAAGCCATTAATTAGGCCTAAGTCCCCTTCTTTTCTGCAGGAGA 152086 Query 6969 ACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGG 7028 | ||| | ||||| ||||| ||| | | || ||||||| |||| | || Sbjct 152085 ATCCCAGGCCTTCCAGGAAGTCGTAGGACTCATTGGCATCCCAGAATCTCACTTCTTTGG 152026 Query 7029 ACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGC 7088 |||| || || || | || ||| || | |||||||||| |||||| | || | Sbjct 152025 ACGACAGTTCTTTAGCATTTGTGTATTCCTCGATAAACCACAGCAACTCCTCCAAAACAC 151966 Query 7089 CCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCGGG 7148 |||||||| | |||||||| | |||||||| |||||||| | | ||| |||| | Sbjct 151965 CCTTCCAGGATACACGTTTGGGTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGTGCA 151906 Query 7149 CCTGTGTGCCGAACACGGAGAGGGTCCCCGT-CCCGGTCCGGTCCCCCTTCCGGTAGCCC 7207 |||| || |||||| || |||||||| || |||||| |||| |||| | |||| Sbjct 151905 CCTGCTTGTGGAACACCGACAGGGTCCCGGTGCCCGGT--GGTCATCCTTTCCAAAGCCG 151848 Query 7208 TCCCTGAGGATCCGCGCCACCTGATACAGATACTGCCACTCCCCATGCGG 7257 |||||||| || | | ||| ||| ||||| |||||| || || Sbjct 151847 CAGCTGAGGATATGCTCAATCTGCCCCAGGTACTGTAGCTCCCCGTGGGG 151798 >seq55 Length=9207070 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||| ||||| || || || ||||| ||||| ||||| ||||| || | |||| Sbjct 7111136 GATCTTCCTCTCATGGCCCTACCTCCATGCCATACCCTTTGCCAGTTCTATGTGGTGAAT 7111195 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| || || | || | |||||||| | || ||||| ||| Sbjct 7111196 GGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGCGGACATGGGCCTTGGTGTGCCCTTC 7111255 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||||| |||||||| || |||||||| || Sbjct 7111256 AACATCGCCAGCTACGCCCTGCTCACCTATATGATCGCACA 7111296 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || |||||||| || |||||||| ||||| || || |||||||| ||||| || | ||| Sbjct 7111296 TGTGCGATCATATAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCAAGGCCC 7111237 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| | || | || || ||||||||||||||||| |||||| | || ||||| ||| Sbjct 7111236 ATGTCCGCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACATAGAACTGG 7111177 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || ||||| ||||| || || || ||||| ||||| ||||| Sbjct 7111176 CAAAGGGTATGGCATGGAGGTAGGGCCATGAGAGGAAGATC 7111136 >seq269 Length=1942430 Score = 134 bits (148), Expect = 1e-26 Identities = 414/633 (65%), Gaps = 23/633 (4%) Strand=Plus/Plus Query 6637 GAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTG 6696 |||||| | || | |||| |||||| ||||| |||| ||||||||| | || | | Sbjct 1775557 GAGCAGGGAATATTTGGCAACGTTGAAGGGCACACCTAGGCCCATGTCTGCTGACCTCTT 1775616 Query 6697 ATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGG 6756 || ||||||||||||||||| | || | | |||| ||||| ||||| || ||| | Sbjct 1775617 GTACAGCTGGCAGGACAGCTCACTGTTTACCATATAGAGATGGCAAAGGGTATGACACAG 1775676 Query 6757 GGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTC 6816 || || ||||| ||| | ||| || || ||||| | |||| | ||| |||||||| Sbjct 1775677 AGGTAGGGCCATGCAAGGAAAATCTTTTGGATTCCAAGAACACAGGATGATTCTTCTGTC 1775736 Query 6817 ATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGA 6876 ||||||||| || | |||| |||| | ||||| ||||| ||||| || || || Sbjct 1775737 ATCAGGGTTGGTTTTGATTGTGT--GTCACCTTGTGCAGTTGGTCTGCTCCTTGACCTGA 1775794 Query 6877 ATAGTCCGCTTCGCTCCCCCGATACTCCG-CCCCAAAGTGTCTCCACTGGAACCCGTAGA 6935 || || | | | | | || | |||||||| | ||||||| || || || | Sbjct 1775795 GTAATCTGAATACATATCTTTGTCTTCTGCCCCCAAAGACT-TCCACTGAAAGCCATAAA 1775853 Query 6936 CCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAG 6995 | ||||| || | |||| || | | ||| | | |||| || | |||| Sbjct 1775854 CTGGGCCTAAAT-ACCCTTCTGTTCTGCT--GAA-----GAAT-ACCAGGAAATTGCGAG 1775904 Query 6996 ACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCC 7055 || || | |||||||| |||| | || | | | || || | || | | | Sbjct 1775905 ACGTGTTCACATCCCAGATTCTCACTGCTTCGG-CAACAATTCTTTAGCATTTATAGATC 1775963 Query 7056 CCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCA 7115 | | || || ||||| | || ||||||| | | |||| ||| || |||| Sbjct 1775964 CTGTGACAAA---------TTCCTCCAAAACACCCTTCCGGAATACACATTTGGTTGTCA 1776014 Query 7116 GCAGCGGAAATTCGCCCCGAAGGTTGTATCGGGCCTGTGTGCCGAACACGGAGAGGGTCC 7175 |||| |||||||| | | ||| |||| || |||| ||| |||| | | ||||| | Sbjct 1776015 GCAGAGGAAATTCATCTCTTAGGATGTAGCGCACCTGCATGCTGAACGCCAACAGGGTGC 1776074 Query 7176 CCGTCCCGGTCCGGTCCCCCTTCCGGTAGCCCTCCCTGAGGATCCGCGCCACCTGATACA 7235 | || | ||| | ||| ||||| || |||| | |||||| || ||| ||| || Sbjct 1776075 CGGTGCTGGTGCTGTCATCCTTCTGGAAGCCACAACGGAGGATGTGCTCCATCTGCCCCA 1776134 Query 7236 GATACTGCCACTCCCCATGCGGTTGAGAGTGGG 7268 |||||||| ||||| ||| || || | |||| Sbjct 1776135 GATACTGCAGCTCCCTATGGGGCTGTGGCTGGG 1776167 Score = 134 bits (148), Expect = 1e-26 Identities = 414/633 (65%), Gaps = 23/633 (4%) Strand=Plus/Minus Query 34077 CCCACTCTCAACCGCATGGGGAGTGGCAGTATCTGTATCAGGTGGCGCGGATCCTCAGGG 34136 |||| | || || ||| ||||| |||||||||| ||| ||| || |||||| | Sbjct 1776167 CCCAGCCACAGCCCCATAGGGAGCTGCAGTATCTGGGGCAGATGGAGCACATCCTCCGTT 1776108 Query 34137 AGGGCTACCGGAAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGG 34196 |||| || ||||| ||| | ||| | || || ||||| | | |||| ||| |||| Sbjct 1776107 GTGGCTTCCAGAAGGATGACAGCACCAGCACCGGCACCCTGTTGGCGTTCAGCATGCAGG 1776048 Query 34197 CCCGATACAACCTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGG 34256 || |||| ||| | | |||||||| |||||||| || ||| |||| | | |||||| Sbjct 1776047 TGCGCTACATCCTAAGAGATGAATTTCCTCTGCTGACAACCAAATGTGTATTCCGGAAGG 1775988 Query 34257 GCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGT 34316 | || | ||||| || || | || | | || | || || | | | Sbjct 1775987 GTGTTTTGGAGGAA---------TTTGTCACAGGATCTATAAATGCTAAAGAATTGTTG- 1775938 Query 34317 CCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT 34376 || | |||| |||||||| | || |||||| | || |||| | | | Sbjct 1775937 CCGAAGCAGTGAGAATCTGGGATGTGAACACGTCTCGCAATTTCCTGGT-ATTC-----T 1775884 Query 34377 TCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTG 34436 || | | || |||| | || ||||| || || || || ||||||| | ||||| Sbjct 1775883 TC--AGCAGAACAGAAGGGT-ATTTAGGCCCAGTTTATGGCTTTCAGTGGA-AGTCTTTG 1775828 Query 34437 GGG-CGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAG 34495 ||| | || | | | | | || || || || || ||||| ||||| ||||| Sbjct 1775827 GGGGCAGAAGACAAAGATATGTATTCAGATTACTCAGGTCAAGGAGCAGACCAACTGCAC 1775768 Query 34496 TACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGG 34555 | |||| |||| | || ||||||||||||||||| ||| | |||| | ||| Sbjct 1775767 AAGGTGAC--ACACAATCAAAACCAACCCTGATGACAGAAGAATCATCCTGTGTTCTTGG 1775710 Query 34556 AACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTAC 34615 || || || ||| | ||| ||||| || || | ||| || ||||| ||||| |||| Sbjct 1775709 AATCCAAAAGATTTTCCTTGCATGGCCCTACCTCTGTGTCATACCCTTTGCCATCTCTAT 1775650 Query 34616 GTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGG 34675 | | || | ||||||||||||||||| || | | || | ||||||||| |||| Sbjct 1775649 ATGGTAAACAGTGAGCTGTCCTGCCAGCTGTACAAGAGGTCAGCAGACATGGGCCTAGGT 1775590 Query 34676 GTGCCGTTCAACATTGCTAGTTACGCTCTGCTC 34708 ||||| |||||| |||| | || | |||||| Sbjct 1775589 GTGCCCTTCAACGTTGCCAAATATTCCCTGCTC 1775557 >seq54 Length=8220942 Score = 102 bits (112), Expect = 7e-17 Identities = 259/393 (66%), Gaps = 1/393 (0%) Strand=Plus/Plus Query 6433 GTACCCTTCCAACACGAAGTCCTCGCTCCTAAAGTCATCGATTGAGGTGACGGCTCGAAT 6492 ||||||||| | | ||||| || || | |||||||| |||| || || || Sbjct 3751080 GTACCCTTCAATCTGAAAGTCTTCAGTCTTGAAGTCATCAATTGTCTCAACTTTTCAAAA 3751139 Query 6493 AATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGAT 6552 |||||||||| |||| || | | | || || ||||| || ||| |||| | Sbjct 3751140 GATTTTGAGCTTTCGGAAAGGCCTTGTTTTTCACTGAAGCTGCATTTTCAGCAGCTCAGT 3751199 Query 6553 GTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCC 6612 ||| |||||||| || || | ||| ||||| || | || | || || || || | Sbjct 3751200 GTGATTCAGGTAAATGTGGGAATCTCCCAAAGTGTATACAAAATCACCTGGCCTCAGGTC 3751259 Query 6613 CACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCC 6672 || | || | ||||||||| |||| || | ||| | ||||||||||| |||| | Sbjct 3751260 CATAATTTGTGTGATCATGTAGGTGAACAAGGAGTAGTTGGCAATGTTGAAGAGCACACA 3751319 Query 6673 TAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTA 6732 | ||| ||| | | | || || | |||||| ||||||| ||||| | || || Sbjct 3751320 CACGTCCACGTCCACTAACCTCTGGTACA-CTGGCAAGACAGCTTACCATTTTCCACATA 3751378 Query 6733 GAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCA 6792 | || ||| || | || | | | | |||| ||||| |||| || || ||||| Sbjct 3751379 GGATGAGCAAAGAGCATGATATGCAGATAAGACCATGAGAGGAAGATATTTTGGATTCCA 3751438 Query 6793 CGCGCACATCACGATCCTTCTGTCATCAGGGTT 6825 || |||| | || ||||||||||||||||| Sbjct 3751439 AGCACACAGGATAATTCTTCTGTCATCAGGGTT 3751471 Score = 102 bits (112), Expect = 7e-17 Identities = 259/393 (66%), Gaps = 1/393 (0%) Strand=Plus/Minus Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579 ||||||||||||||||| || | |||| || ||||| || || |||| ||||| ||| Sbjct 3751471 AACCCTGATGACAGAAGAATTATCCTGTGTGCTTGGAATCCAAAATATCTTCCTCTCATG 3751412 Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGC 34639 | | | | | || | || ||| || ||| || | ||||| ||||||| ||| Sbjct 3751411 GTCTTATCTGCATATCATGCTCTTTGCTCATCCTATGTGGAAAATGGTAAGCTGTCTTGC 3751352 Query 34640 CAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTAC 34699 ||| | || || | | | ||| ||| | | |||| ||||||||||| | ||| Sbjct 3751351 CAG-TGTACCAGAGGTTAGTGGACGTGGACGTGTGTGTGCTCTTCAACATTGCCAACTAC 3751293 Query 34700 GCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCAT 34759 | || |||| ||||||||| | || | ||| || || || || | || | Sbjct 3751292 TCCTTGTTCACCTACATGATCACACAAATTATGGACCTGAGGCCAGGTGATTTTGTATAC 3751233 Query 34760 ACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAA 34819 || ||||| ||| | || || |||||||| |||| |||| ||| || ||||| || Sbjct 3751232 ACTTTGGGAGATTCCCACATTTACCTGAATCACACTGAGCTGCTGAAAATGCAGCTTCAG 3751173 Query 34820 CGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGAGCCGTCACCTCAATCGATGAC 34879 || | | | || |||| |||||||||| || || || |||| |||||| Sbjct 3751172 TGAAAAACAAGGCCTTTCCGAAAGCTCAAAATCTTTTGAAAAGTTGAGACAATTGATGAC 3751113 Query 34880 TTTAGGAGCGAGGACTTCGTGTTGGAAGGGTAC 34912 || | || || ||||| | | ||||||||| Sbjct 3751112 TTCAAGACTGAAGACTTTCAGATTGAAGGGTAC 3751080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448060155211680