Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq1 206 2e-48 seq62 113 4e-20 >seq1 Length=43245305 Score = 206 bits (228), Expect = 2e-48 Identities = 203/262 (77%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 1269 GAAACGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAA 1328 ||||| | || ||||| | ||||| || ||||| ||| | ||||| |||||||||| Sbjct 32510126 GAAACTTCCCATGAAGTCTTGATTGTGACGTGGCAGAAAATCAAAGCCGTAAGCCCAGAA 32510067 Query 1329 AACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAA 1388 |||||||| || || || || |||| || ||||| || ||| | || || || ||||| Sbjct 32510066 AACATGGCTACCTTCAGCAAGAACCATGGTGTTGTGGTCCAGACTGCCTATAAGGATAAG 32510007 Query 1389 ATGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTG 1448 || ||||| |||||||| ||||| || | | |||| || ||||||||||| || || ||| Sbjct 32510006 ATAAACATCACTGAGCTGGGACTCCAGAGCTCAACCATTACCTTCTGGAATACTACCTTG 32509947 Query 1449 GATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGA 1508 |||||||| ||||| |||||||| | || || |||||||| || ||||| || |||||| Sbjct 32509946 GATGATGAGGGGTGTTACAAGTGCCTCTTCAATACTTTTGGTTCCGGGAAAATCTCAGGA 32509887 Query 1509 ATAGGGTGTCTAACCCTTTTTG 1530 |||| || || ||||| |||| Sbjct 32509886 ATAGCCTGCCTCACCCTCTTTG 32509865 >seq62 Length=7352371 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||| ||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 895972 GTGGTGGAGGAGCTTTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 896031 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||| | Sbjct 896032 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAGC 896091 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 896092 ATCGCCCTGTGGATGACCGA 896111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414294473469016