Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq12 98.7 9e-16 seq14 95.1 1e-14 seq141 87.8 2e-12 seq44 87.8 2e-12 seq11601 82.4 7e-11 >seq12 Length=16976894 Score = 98.7 bits (108), Expect = 9e-16 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 |||| |||||| || || ||| |||||| || |||||||| || | | || || | Sbjct 6395811 CGTAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAGGGAGTGCGGCCA 6395752 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 | || ||||||||||| ||||| | |||||||||||||| |||||| | || ||| || Sbjct 6395751 TTCTCCAGCTGTTTGCCGGCAAAACTCAGACGCTGCTGGTCAGGTGGG-ATGCCCTCCTT 6395693 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| | |||| ||||| | | | || || || | || || || ||||| Sbjct 6395692 GTCTTGGGTTTTAGCTTTGACGTTTTCGATGGTGTCACTGGGCTGGACCTCGTGTGTGAT 6395633 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || ||| |||| || || |||||||||||||||| Sbjct 6395632 GGTCTTGCCCATCAGGGTCTTCACAAAGATTTGCATCT 6395595 >seq14 Length=16290508 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 39103 ATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGC 39162 |||||||| || | || || || | | || ||||||| ||| ||||| || |||||| Sbjct 4376034 ATATTATAGTCTGAAAAAGTGCGGCCATTCTCCAGCTGTTCGCCTGCAAAAATTAGACGC 4376093 Query 39163 TGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCA-CCG 39220 |||||||| |||| | | || ||| ||||| |||||| ||||| ||| || | Sbjct 4376094 TGCTGGTCAGGTGTG-ATGCCCTCCTTGTCTTGGATTTTAGCTTTGA-CGTTTTCAGTGG 4376151 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 |||| || | ||| || || | ||||| | ||||||||||| | || ||||| |||| Sbjct 4376152 TATCACTGGGCTCGACCTCGAGTGTGATGGTCTTTCCCGTCAGAATCTTGACAAACATTT 4376211 Query 39281 GCATCTTTAC 39290 |||||| ||| Sbjct 4376212 GCATCTCTAC 4376221 >seq141 Length=4710130 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/213 (70%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| |||||| || ||||| || | || ||||| | | || || Sbjct 2829343 CACCAAGTGCAG-GTGGACTCTTTCTGGATATTGTAGTGGGAGAGTGT--GGCCATCCTC 2829287 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||||||||||||||| || |||||||||||||| ||| || | || ||| | || Sbjct 2829286 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTAGG-ATGCCCTCCTCATCTT 2829228 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 |||||| |||| || | | ||| || | ||| || || | ||||| | | Sbjct 2829227 GGATTTTAGCTTTGCCATTCTCAGTGGCATCACTGGGCTCGACCTCGAGTGTGATGGTCT 2829168 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || ||||| ||| | | |||||||| ||||| Sbjct 2829167 TGCCGGTCAGGGTTATCATAAAGATTTACATCT 2829135 >seq44 Length=10323257 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || |||| ||| || || |||||| || || || ||||| | ||| || || | Sbjct 7626801 CGAAAGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCA 7626860 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| ||||| ||||| || || | ||||||||| | ||| | | || || Sbjct 7626861 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATACCTTCCTTA 7626920 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| ||| || || | || | | || || || | |||||| |||| ||||| Sbjct 7626921 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCCAGGGTGATG 7626980 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 | || || ||||| || || || ||||||||||| || || Sbjct 7626981 GTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTGAC 7627021 >seq11601 Length=6222 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/213 (70%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| |||||| || ||||| || |||| ||||| | | || || Sbjct 4329 CACCAAGTGCAG-GTGGACTCTTTCTGGATATTGTAGTCGGAGAGTGT--GGCCATCCTC 4385 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||||||||||||||| ||||||| ||||||||| ||| || | || ||| | || Sbjct 4386 CAGCTGTTTGCCCGCAAAAATAAGACACTGCTGGTCAGGTAGG-ATGCCCTCCTCATCTT 4444 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 |||||| |||| || | | ||| || | ||| || || | |||| | | Sbjct 4445 GGATTTTAGCTTTGCCATTCTCAGTGGCATCACTGGGCTCGACCTCGAGTATGATGGTCT 4504 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || |||| ||| | | |||||||| ||||| Sbjct 4505 TGCCGGTCAAGGTTATCATAAAGATTTACATCT 4537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429356644769822