Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq44 98.7 7e-16 seq149 95.1 8e-15 seq391 84.2 1e-11 >seq44 Length=10323257 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || ||||| || ||| Sbjct 7626787 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGT 7626728 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | || || ||||| | || ||||| || Sbjct 7626727 GACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGATAAGGAAGGCATCCCCCCAGACCA 7626669 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || |||||||| | |||||| | |||||||| Sbjct 7626668 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 7626609 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 7626608 CATTCAGAAAGAGTCGAC 7626591 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || ||||| || ||||| || || || || ||||| || || || || | Sbjct 7627018 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCA 7626959 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | || | | || || |||||| | || || || Sbjct 7626958 AGTGACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGATAAGGAAGGTATCCCCCCTGA 7626900 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | || ||||| ||||| || |||||||| | |||||| | ||||| Sbjct 7626899 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 7626840 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || |||||||| || Sbjct 7626839 CAACATTCAGAAAGAGTCGAC 7626819 >seq149 Length=3750918 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| || || || | ||||||||||| ||||| || Sbjct 2394111 AAGATGCAGATTTTCGTGAAAACCCTTACAGGGAAGATCATCACTCTCGAGGTTGAACCC 2394052 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || | || |||| | || || ||| Sbjct 2394051 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAGAAATTCCTCCTGAT 2393992 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | | ||||| ||||| ||||||||||| | ||| ||| | || ||| Sbjct 2393991 CAGCAAAGACTGACCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTCTGTCTGACTAC 2393932 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| ||||| ||||||| Sbjct 2393931 AACATTCAAAAGTAGTCCAC 2393912 >seq391 Length=1629883 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || |||||||| || || || | ||||||| || ||||| || Sbjct 1120462 AAGATGCAGATTTTTGTGAAAACCCTTACCGGGAAGTCTTTCACTCTTGAGGTTGAACCC 1120521 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||| || | |||| |||| || || || || ||||| || || ||| Sbjct 1120522 TCGGTTACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAACTCCTCCTGAT 1120581 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | | ||||| | ||| ||||||||||||| ||| || || || ||| Sbjct 1120582 CAGCAAAGACTGACCTTTGCTGACAAGCAACTGGAAGACGGACGTACCTTGTCTGACTAC 1120641 Query 23788 AACATACAAAAAGAGTCCACA 23808 | ||| ||||| ||||||||| Sbjct 1120642 AGCATTCAAAAGGAGTCCACA 1120662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337860911055752