Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq44 127 5e-24 seq82 100 7e-16 seq3 96.9 8e-15 seq1 91.5 4e-13 >seq44 Length=10323257 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225504 GACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTC 225563 ||| || || || || || ||||| || | |||||||| | | ||| | |||||||| Sbjct 7626806 GACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 7626865 Query 225564 TAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTG 225623 |||||||| || || ||||| || | || ||||| || || ||||||||||| || || Sbjct 7626866 CAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATACCTTCCTTATCCTG 7626925 Query 225624 GATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTT 225683 |||||| ||||||| || |||||||| | ||||| || | ||||| ||||| Sbjct 7626926 GATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTT 7626985 Query 225684 GCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||| |||| || || | ||| | ||||||||| Sbjct 7626986 GCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 7627018 >seq82 Length=9063773 Score = 100 bits (110), Expect = 7e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 |||||||||| ||||| | ||||| || |||||||| | |||| | | |||||| Sbjct 1209966 CGAAGTCTCAACACAAGA-GAAGAGTAGACTCTTTTTGAA---TGTAGCCAGACAAAGTA 1210021 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 ||||||| || ||||| ||||| ||| | |||| ||| || || || ||||||||| Sbjct 1210022 TGTTCATCTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATACCT 1210081 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| | |||||||| ||| ||| | | | ||||| || ||| || || | Sbjct 1210082 TCCTTACCCTGGATCTTGGCCTTTACATTTGCTTTTGTGTCCAGGGGTTCTACCTCAAGA 1210141 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| ||||| ||| | | ||||| Sbjct 1210142 GTGATGGTCTTCCCCATAAGGGTTTT 1210167 >seq3 Length=23391312 Score = 96.9 bits (106), Expect = 8e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||| || |||||||| ||||| || || ||||| || || |||||||| |||||||| Sbjct 6244163 AATACCTGTCCATCAGTGATAGAAATGACGTTTGTCGGAATGTAAGCAGACACATCACCA 6244104 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578 ||||||||||| | || ||||| || || | || |||||||||||| Sbjct 6244103 GCTTGTGTTTCTATGACTGGTAAAGCAGTCAAGGAGCCACCACCAAAA 6244056 Score = 95.1 bits (104), Expect = 3e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| ||||| || || || | || ||| ||| |||||||||||||| ||||||| Sbjct 6243731 CACTTCAGTACCTGGCTCCTTATTCTGGCTGTTCTATGGGAGAATATTTTAGGGATAATG 6243790 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACA 5116 | ||||||||||| |||||||| ||||| ||| ||||| Sbjct 6243791 GCAAACATGCTTTGATCATCTATGATGACTTATCCAAACA 6243830 >seq1 Length=43245305 Score = 91.5 bits (100), Expect = 4e-13 Identities = 132/185 (71%), Gaps = 1/185 (1%) Strand=Plus/Minus Query 225520 GATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCG 225579 || ||||| |||| |||||| | || || | | ||||||||| |||||||| || | Sbjct 14029312 GACTCTTTCTGGATATTGTAGTTGGACAGGGAGCGCCCATCTTCCAGCTGCTTTCCGACA 14029253 Query 225580 AAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACA 225639 ||||| | | || |||| ||| ||||| | | ||||||||||||||| ||| ||| Sbjct 14029252 AAGATCGGCCTCTGCTGGTTGGG-GGAATGCTCTTCTTGTCTTGGATCTTGGCCTTGACA 14029194 Query 225640 GCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTT 225699 | |||||||| || ||||| || | ||||| ||||| || ||||| || || Sbjct 14029193 TTCTTGATGGTGTTGCTGGACTCCACTTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTC 14029134 Query 225700 ATGAA 225704 | ||| Sbjct 14029133 ACGAA 14029129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191979708729236