Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq12 102 7e-17 seq105 98.7 8e-16 seq222 89.7 4e-13 >seq12 Length=16976894 Score = 102 bits (112), Expect = 7e-17 Identities = 155/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 31769 CTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCT 31828 || || |||||||| ||||| | || | ||||| || ||||| | | || ||||||| Sbjct 16178935 CTCGTGAAAACCGACATTCAGCTCGCTCTTCCTTCTGGATGCTATGAAAGAGTAGCTCC- 16178877 Query 31829 AGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGAC 31888 | |||||| ||||| | |||||||| || || || || || ||||| |||||| ||| Sbjct 16178876 ACATCTGGCTTGGCTGCAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGAAGAT 16178817 Query 31889 TATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATA 31945 |||| |||||| || |||| | ||||||||||| |||||| | | ||| | Sbjct 16178816 TATAAAGGAAATACTGATGTTGTACTCTTTAATTTTGGCAAAGAAAAGT-TTGAAGT-CA 16178759 Query 31946 AAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 |||||||| || | | || || || ||||| ||| Sbjct 16178758 AAAAAGGGTGACCGAATTGCCCAGCTCATTTGTGAA 16178723 >seq105 Length=3566936 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| |||||| ||||| || || || |||||||||||||||||||| ||||| || ||| Sbjct 2108095 TCTTTAATATAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 2108036 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || ||||| || || | |||||||| | |||||||| Sbjct 2108035 ATTTGGAAGCCGTAGAAACAGCGGGCTTCTGTGATCTGAACTTC 2107992 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || ||||| || | || ||||| | || | || || Sbjct 2109089 TCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCCCGTTTCTTG 2109030 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| ||||| ||||| || Sbjct 2109029 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCAAAAGCG 2108970 Query 4692 AC 4693 || Sbjct 2108969 AC 2108968 >seq222 Length=2514393 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| || || || || ||||||||||||||||| || || | Sbjct 513666 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 513722 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| ||||| |||| || || | ||||| || |||||||| || | ||| || | Sbjct 513723 TGTGAGAGATAAAATACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 513782 Query 5041 TTAAATCAAC 5050 ||| ||||| Sbjct 513783 ATAAGTCAAC 513792 Score = 86.0 bits (94), Expect = 5e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| |||||||||||| Sbjct 501470 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATATTTTCC 501529 Query 4320 ATAAAATCAAACGGATTAGTTGCGT 4344 |||||||| || ||||| ||||| Sbjct 501530 ATAAAATCGAAGGGATTTTCTGCGT 501554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426861742749302