Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05]
36,094 sequences; 2,198,284,804 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq26467 136 5e-27
seq311 136 5e-27
seq105 118 1e-21
>seq26467
Length=4180
Score = 136 bits (150), Expect = 5e-27
Identities = 110/133 (83%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| ||||| ||||| |||||||| || || |||||||||||||| | ||
Sbjct 2944 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 2885
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| ||||| | ||| |||||||| |||||||| |||||||| || | | |||||||
Sbjct 2884 TCATTATTTCCAAGAATCTGAGCAGTTGAAGCAGTAGGCATAGGGGCAATAAGTAAACTA 2825
Query 77247 TTTCTGAGACCAT 77259
||||| | |||||
Sbjct 2824 TTTCTTATACCAT 2812
>seq311
Length=2724376
Score = 136 bits (150), Expect = 5e-27
Identities = 110/133 (83%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| ||||| ||||| |||||||| || || |||||||||||||| | ||
Sbjct 2492909 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 2492850
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| ||||| | ||| |||||||| |||||||| |||||||| || | | |||||||
Sbjct 2492849 TCATTATTTCCAAGAATCTGAGCAGTTGAAGCAGTAGGCATAGGGGCAATAAGTAAACTA 2492790
Query 77247 TTTCTGAGACCAT 77259
||||| | |||||
Sbjct 2492789 TTTCTTATACCAT 2492777
Score = 107 bits (118), Expect = 3e-18
Identities = 109/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457
||| || ||||| || | || ||||| ||||| |||||||| | |||||||| || ||
Sbjct 2474117 AGTGCCAGCATTGAAAAGAGTGGGAGAGGCATGGGTAAACCACCTCTCAGAAAGAAGGTT 2474058
Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517
||| ||||||||||| | ||| || || || ||||| || || | ||| | ||||||
Sbjct 2474057 GTACGTTTCAATAGCAGCTTCAATATCTTCTTCGTGAATCCCCACAGATACCCTCATCAA 2473998
Query 78518 CATATGCTGAGGTCTTTCAACC 78539
|||||| || ||||||||| ||
Sbjct 2473997 CATATGTTGTGGTCTTTCAGCC 2473976
Score = 102 bits (112), Expect = 1e-16
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
||||||||||| |||||||| || ||||| || |||| || || || | || | |||
Sbjct 2478015 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGT 2477956
Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122
||||| |||||||| ||||| || | ||| |||||||| | ||||| ||||||| ||
Sbjct 2477955 TCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATATCTAAATGCCAAGGC 2477896
Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151
|| || || || || | | ||||||||
Sbjct 2477895 TCCAGGTAAATAGCAAATGCCCCAGGTCG 2477867
>seq105
Length=3566936
Score = 118 bits (130), Expect = 1e-21
Identities = 98/120 (82%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|||||||| ||||| | ||| || ||||| ||||| || ||||| ||||| ||||| |||
Sbjct 2109089 TCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCCCGTTTCTTG 2109030
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284
||||| ||||| | || ||||| ||||||||||| || ||||| ||||| ||||| |||
Sbjct 2109029 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACGGCAGCAAAAGCG 2108970
Score = 104 bits (114), Expect = 3e-17
Identities = 111/145 (77%), Gaps = 4/145 (3%)
Strand=Plus/Minus
Query 47789 GGTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTC 47844
||||| |||| ||||| |||| || | |||| ||| ||| | || ||||| ||||
Sbjct 2110535 GGTTCATTTAGAAGTCGGCATCCAAGGTAAAAGAATTCTCTGTTGGACCGGACATCACTC 2110476
Query 47845 CCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATA 47904
|||| || ||||| || ||||| | ||||| || || |||||||| ||||||| ||| |
Sbjct 2110475 CCATCTTCTGATACTCGCCCACTCTCTTCTCAAAGAAGTTAGTTTTCCCTTCCAGTGAAA 2110416
Query 47905 TATTTTCCATAAAATCAAATGGATT 47929
| || ||||| || |||||||||||
Sbjct 2110415 TGTTCTCCATGAAGTCAAATGGATT 2110391
Score = 86.0 bits (94), Expect = 9e-12
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 48391 TTTCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450
|||| ||| |||||||| || || || || | |||||||||||||| || || || |
Sbjct 2108106 TTTCCTTGGAATCTTTAATATAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGT 2108047
Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505
|||| || || || || || ||||| ||||| | |||||||||||||| || ||
Sbjct 2108046 TTTCCATGGCAATTTGGAAGCCGTAGAAACAGCGGGCTTCTGTGATCTGAACTTC 2107992
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694355382804160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |