Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq137 89.7 5e-13 seq186 87.8 2e-12 seq4128 86.0 7e-12 seq141 86.0 7e-12 seq173 84.2 2e-11 >seq137 Length=6094345 Score = 89.7 bits (98), Expect = 5e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446 || ||||||| || |||| ||| |||||| |||||||||||||||||||| ||||| Sbjct 1937360 GCGCACTGCAGCCCAGAACTCCTGGGCTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTA 1937419 Query 8447 GCTGGGATTACAGGCAAAAGCCAC 8470 ||||||| |||||||| | ||||| Sbjct 1937420 GCTGGGACTACAGGCACATGCCAC 1937443 Score = 89.7 bits (98), Expect = 5e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446 || ||||||| || |||| ||| |||||| |||||||||||||||||||| ||||| Sbjct 1939213 GCGCACTGCAGCCCAGAACTCCTGGGCTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTA 1939272 Query 8447 GCTGGGATTACAGGCAAAAGCCAC 8470 ||||||| |||||||| | ||||| Sbjct 1939273 GCTGGGACTACAGGCACATGCCAC 1939296 >seq186 Length=3571353 Score = 87.8 bits (96), Expect = 2e-12 Identities = 70/83 (84%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||| ||| |||||| || |||||||||||||||| |||||||||||| |||||||| | Sbjct 404543 CTCCTGGGCTCAAGCGATCCTCCTGCCTCAGCCTCTCGAGTAGCTGGGACTACAGGCACA 404484 Query 8465 AGCCACCACGCCAAGCTAATTTT 8487 |||||| ||| ||| |||||| Sbjct 404483 CACCACCATGCCCAGC-AATTTT 404462 >seq4128 Length=14177 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||| ||| |||||| || ||||||||||||||||| |||||||||||| ||||||| Sbjct 4392 CTCCTGGGCTCAAGCGATCCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGTG 4333 Query 8465 AGCCACCACGCC 8476 ||||||||||| Sbjct 4332 CGCCACCACGCC 4321 >seq141 Length=4710130 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446 || |||| ||||| |||| ||| |||||| || ||||||||||||||||| ||||| Sbjct 4314035 GCACACTACAACCCAGAACTCCTGGGCTCAAGCGATCCTCCTGCCTCAGCCTCCTGAGTA 4313976 Query 8447 GCTGGGATTACAGGCAAAAGCCACCACGCC 8476 ||||||| ||||||| | |||| |||||| Sbjct 4313975 GCTGGGAGTACAGGCGCATGCCATCACGCC 4313946 >seq173 Length=3539094 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 8537 GAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGC 8596 ||||||||| |||| | ||||| |||||||| ||||||||||| ||||||| ||||||| Sbjct 2551363 GAACTCCTGGGCTCAAGCGATCCTCCTGCCTCAGCCTCCCAAAGAGCTGGGACTACAGGC 2551422 Query 8597 ATGAGCCACCGCGCCTGGC 8615 | ||||||||||||| Sbjct 2551423 GTTTAACACCGCGCCTGGC 2551441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521252717651600