Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq44 129 4e-25 seq302 96.9 2e-15 seq102 86.0 5e-12 seq27 86.0 5e-12 seq456 84.2 2e-11 seq391 82.4 5e-11 >seq44 Length=10323257 Score = 129 bits (142), Expect = 4e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || ||||| || || || ||| || || ||||||||||| Sbjct 7626785 CATACCACCCCTCAGACGAAAGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATC 7626844 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| || |||||||| | | |||||| || | Sbjct 7626845 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGG 7626904 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||||||||| ||| ||||| ||||| | | |||||||| | || Sbjct 7626905 GGGGATACCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTC 7626964 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || ||||| || || ||||||||||||||||||||||| Sbjct 7626965 CACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 7627015 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | | |||||||| || || ||| || || ||||||||||| | Sbjct 7626561 CCACCCCTCAGACGTAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 7626620 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| || |||||||| | | |||||| |||| || Sbjct 7626621 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 7626680 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| ||| ||||| ||||| | | |||||||| || |||||| Sbjct 7626681 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACT 7626740 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || ||||| || || ||||||||||||||||| ||||| Sbjct 7626741 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 7626787 >seq302 Length=4907021 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/221 (71%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGCGAGTTGGCG 44178 ||||||||||| || ||||| ||| ||||||||| ||| ||||||| | | || | | Sbjct 2002051 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAATCAGACAAGAT-ATG 2002109 Query 44179 CTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTC 44238 | || ||||| ||||| || |||||||| | | ||||||| | ||| | ||||| Sbjct 2002110 TCCATCTTCCAGTTGCTTGCCAGCAAAGATAAGTCTTTGCTGATGAGGAGGAATTCCTTC 2002169 Query 44239 CTTTTCCGTTATCTTCTGC-TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCG 44297 ||| ||| ||||| | || || || |||| || || | || ||| |||| | | Sbjct 2002170 CTTATCCTGGATCTTGGCCTTTGTATCTT-CTATTGTATCTGAGGGTTCAACCTTGAGAG 2002228 Query 44298 TAATCGTCTTTCC-CGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| ||||| || | | ||||| ||||| || || ||||| Sbjct 2002229 TAATGGTCTTCCCTCATAAGGGTTTTCACAAAAATCTGCAT 2002269 >seq102 Length=6558185 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || ||| ||| || || |||||||| || | ||| ||| | ||| || Sbjct 2020074 CACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGAGTGCGATTGTCCTC 2020133 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||| || || ||||| |||| || |||| | || || | |||||||| || Sbjct 2020134 CAGCTGTTTGCCCGCAAAAATCAGACACTGCAGGTCATGTGGGATGCCTTCCTTGTCTCG 2020193 Query 44248 TATCTTCTGCTTCAATGTTCCTA-TGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || || |||| | ||| | |||||| || || |||| ||||| |||| Sbjct 2020194 GATTTTA-GCTTTGACGTTATCAGTGGTGTTACTGGGCTCGACCTTGTGTGTAATGGTCT 2020252 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||| | || |||||||||||||||||||| Sbjct 2020253 TGCCCATCAGTGTCTTCACGAAGATTTGCAT 2020283 >seq27 Length=11214825 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||||| || || ||| || ||||||||||| || | || | || | || ||| Sbjct 501428 ACCAGGTACAGAGTAGACTCTTTCTGGATGTTGTAGTCAGATAGGATGTGCCCATCTTCC 501369 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| |||| ||||||||||| | || ||||| | || | || || || || Sbjct 501368 AGCTGTTTCCTGGCAAAGATCAGCCTCTCTTGATCAGGGGGGATGCCCTCTTTATCTTGG 501309 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| || || | || | | |||||||| || | |||||||| || || ||||| Sbjct 501308 ATCTT-GGCCTCGACGTGCTCAGTGGTGTCGCTGGGCTTCACCTCCAGGGTGATGGTCTT 501250 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCA 44336 | || | ||||||||||||||| |||| Sbjct 501249 CTCGGTCAAGGTCTTCACGAAGATCTGCA 501221 >seq456 Length=605306 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| ||| || ||||||||||| |||| || |||| | || ||| Sbjct 383403 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 383344 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 |||||||| ||||||||||||| | |||||| || | || | || ||||| || Sbjct 383343 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 383288 >seq391 Length=1629883 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/219 (69%), Gaps = 7/219 (3%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGCGAGTTGGCG 44178 ||||||||||| |||| ||| ||||||||| ||| |||| || | | || | || Sbjct 1120677 AGTCTCAACACAAGGT-----GTGGACTCCTTTTGAATGCTGTAGTCAGACAAGGT-ACG 1120624 Query 44179 CTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTC 44238 |||| ||||| ||||| | |||||| ||| | |||||||| | ||| ||||| Sbjct 1120623 TCCGTCTTCCAGTTGCTTGTCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAGTTCCTTC 1120564 Query 44239 CTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 ||| ||| ||||| ||| | || |||| || | | || ||| ||||| | || Sbjct 1120563 CTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTAACCGAGGGTTCAACCTCAAGAGT 1120504 Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | | ||| || || ||||| ||||| || || ||||| Sbjct 1120503 GAAAGACTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 1120465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359832041797998