Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05]
36,094 sequences; 2,198,284,804 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq44 129 4e-25
seq302 96.9 2e-15
seq102 86.0 5e-12
seq27 86.0 5e-12
seq456 84.2 2e-11
seq391 82.4 5e-11
>seq44
Length=10323257
Score = 129 bits (142), Expect = 4e-25
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || ||||| | || ||||| || || || ||| || || |||||||||||
Sbjct 7626785 CATACCACCCCTCAGACGAAAGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATC 7626844
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || ||| | || ||||||||||| || |||||||| | | |||||| || |
Sbjct 7626845 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGG 7626904
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286
|| | ||||||||| ||| ||||| ||||| | | |||||||| | ||
Sbjct 7626905 GGGGATACCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTC 7626964
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||||| || || ||||| || || |||||||||||||||||||||||
Sbjct 7626965 CACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 7627015
Score = 125 bits (138), Expect = 5e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || ||||| | | |||||||| || || ||| || || ||||||||||| |
Sbjct 7626561 CCACCCCTCAGACGTAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 7626620
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| ||| | || ||||||||||| || |||||||| | | |||||| |||| ||
Sbjct 7626621 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 7626680
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290
| |||||||| ||| ||||| ||||| | | |||||||| || ||||||
Sbjct 7626681 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACT 7626740
Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||| || || ||||| || || ||||||||||||||||| |||||
Sbjct 7626741 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 7626787
>seq302
Length=4907021
Score = 96.9 bits (106), Expect = 2e-15
Identities = 158/221 (71%), Gaps = 5/221 (2%)
Strand=Plus/Plus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGCGAGTTGGCG 44178
||||||||||| || ||||| ||| ||||||||| ||| ||||||| | | || | |
Sbjct 2002051 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAATCAGACAAGAT-ATG 2002109
Query 44179 CTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTC 44238
| || ||||| ||||| || |||||||| | | ||||||| | ||| | |||||
Sbjct 2002110 TCCATCTTCCAGTTGCTTGCCAGCAAAGATAAGTCTTTGCTGATGAGGAGGAATTCCTTC 2002169
Query 44239 CTTTTCCGTTATCTTCTGC-TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCG 44297
||| ||| ||||| | || || || |||| || || | || ||| |||| | |
Sbjct 2002170 CTTATCCTGGATCTTGGCCTTTGTATCTT-CTATTGTATCTGAGGGTTCAACCTTGAGAG 2002228
Query 44298 TAATCGTCTTTCC-CGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||| ||||| || | | ||||| ||||| || || |||||
Sbjct 2002229 TAATGGTCTTCCCTCATAAGGGTTTTCACAAAAATCTGCAT 2002269
>seq102
Length=6558185
Score = 86.0 bits (94), Expect = 5e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| ||| || ||| ||| || || |||||||| || | ||| ||| | ||| ||
Sbjct 2020074 CACCAAGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGAGTGCGATTGTCCTC 2020133
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||| || || ||||| |||| || |||| | || || | |||||||| ||
Sbjct 2020134 CAGCTGTTTGCCCGCAAAAATCAGACACTGCAGGTCATGTGGGATGCCTTCCTTGTCTCG 2020193
Query 44248 TATCTTCTGCTTCAATGTTCCTA-TGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
|| || |||| | ||| | |||||| || || |||| ||||| ||||
Sbjct 2020194 GATTTTA-GCTTTGACGTTATCAGTGGTGTTACTGGGCTCGACCTTGTGTGTAATGGTCT 2020252
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| ||| | || ||||||||||||||||||||
Sbjct 2020253 TGCCCATCAGTGTCTTCACGAAGATTTGCAT 2020283
>seq27
Length=11214825
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/209 (70%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
||||||| || || ||| || ||||||||||| || | || | || | || |||
Sbjct 501428 ACCAGGTACAGAGTAGACTCTTTCTGGATGTTGTAGTCAGATAGGATGTGCCCATCTTCC 501369
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
||||| |||| ||||||||||| | || ||||| | || | || || || ||
Sbjct 501368 AGCTGTTTCCTGGCAAAGATCAGCCTCTCTTGATCAGGGGGGATGCCCTCTTTATCTTGG 501309
Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| || || | || | | |||||||| || | |||||||| || || |||||
Sbjct 501308 ATCTT-GGCCTCGACGTGCTCAGTGGTGTCGCTGGGCTTCACCTCCAGGGTGATGGTCTT 501250
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCA 44336
| || | ||||||||||||||| ||||
Sbjct 501249 CTCGGTCAAGGTCTTCACGAAGATCTGCA 501221
>seq456
Length=605306
Score = 84.2 bits (92), Expect = 2e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||| || ||| ||| || ||||||||||| |||| || |||| | || |||
Sbjct 383403 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 383344
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244
|||||||| ||||||||||||| | |||||| || | || | || ||||| ||
Sbjct 383343 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 383288
>seq391
Length=1629883
Score = 82.4 bits (90), Expect = 5e-11
Identities = 151/219 (69%), Gaps = 7/219 (3%)
Strand=Plus/Minus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGCGAGTTGGCG 44178
||||||||||| |||| ||| ||||||||| ||| |||| || | | || | ||
Sbjct 1120677 AGTCTCAACACAAGGT-----GTGGACTCCTTTTGAATGCTGTAGTCAGACAAGGT-ACG 1120624
Query 44179 CTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTC 44238
|||| ||||| ||||| | |||||| ||| | |||||||| | ||| |||||
Sbjct 1120623 TCCGTCTTCCAGTTGCTTGTCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAGTTCCTTC 1120564
Query 44239 CTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298
||| ||| ||||| ||| | || |||| || | | || ||| ||||| | ||
Sbjct 1120563 CTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTAACCGAGGGTTCAACCTCAAGAGT 1120504
Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| | ||| || || ||||| ||||| || || |||||
Sbjct 1120503 GAAAGACTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 1120465
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359832041797998
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |