Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq98 179 5e-40 seq61 122 1e-22 >seq98 Length=6041525 Score = 179 bits (198), Expect = 5e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| |||||||| |||||||||||| || ||||| || ||||| ||||| Sbjct 3625085 GTCTGGAACAAACGCTCGTCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACACT 3625026 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||| || || | ||||| || |||||||||||||| || ||||| ||||| ||||| Sbjct 3625025 CTGTTATGCTCTCGCAGCCAAATTGTGGCGTACATCATCAGGCCAGGCACCAGACCAAAC 3624966 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 | || || || ||||| | |||| || ||| || || | || ||||||||||| | | Sbjct 3624965 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGGACGTGAGGGGGATAGATCATCTCC 3624906 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| |||||||| | ||| |||||||| || || ||||| |||| Sbjct 3624905 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 3624857 Score = 138 bits (152), Expect = 2e-27 Identities = 201/284 (71%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||| || || || || | |||| ||||||||||| | ||| | |||| ||| | Sbjct 3626657 GGACAGCCTTTCACATTATTGCAGATGAGAGACTGAATTGAGGCGGTGTTGATGATTTTG 3626598 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || || || ||||| || || ||||| ||||||||||| || || || || | || Sbjct 3626597 AAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGTGAGGAGAACATATAGCATTA 3626538 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||| || ||||| | |||||| || || || | || | ||| ||||||| |||||| Sbjct 3626537 CCCATAAGTCCTTTCAAGGAGAAAGGTGCTCCAAGTTCCACCATGGTCTCACCAAAGATG 3626478 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 || | ||||| |||||||| |||| | | | |||||||||| || || | ||| Sbjct 3626477 GCATCTGGACGAGGCTTTTCAACCAGAAGGGCAGGATACAGCTCCATGGCATCAATGTCA 3626418 Query 8543 CCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 || ||||| || | || ||||| || ||||| |||||||| Sbjct 3626417 CCATAAAGTGCTTCTAACTCCGCAGCCATTTCCTTCTCTCCTGT 3626374 Score = 116 bits (128), Expect = 5e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | |||||||| || ||||||| || || || |||| || | Sbjct 3623907 TCACCTTTCACACCCATGGGAGTTGGGCAGTCGTGAGCCACAGGGGGAAGAACTCTGGTA 3623848 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 |||||||||||||| || || |||||||||||| ||| | |||| || ||||| | Sbjct 3623847 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTGTAGCCATAGTGTGCATTGTAAGTT 3623788 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 ||||||||||||| ||||| |||||| |||| Sbjct 3623787 GGAGGGCTGTCAACCAAATGGGATCTGGCTGA 3623756 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 3624509 TCTTACCCCATGACCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 3624450 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||| || || ||||| || ||| |||| || |||||||| || || |||||||||||||| Sbjct 3624449 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAAATTTGTGCCCTGGGGATC 3624390 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 || || | || | || ||| ||||||||||| Sbjct 3624389 AGGGACAAACTTTCTTCTCAGGAGAAATTTTTCCACAA 3624352 Score = 93.3 bits (102), Expect = 6e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || ||||| | |||| ||||| || | |||||||| || || | Sbjct 3625698 CTTACCCTGCCAGCAATTTGCCTACTGAATGATTCAACAAACTGGGTAAGCCCATGTTCC 3625639 Query 9004 ATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACT-TTGTTTTATCAATCTC 9062 | | |||||| |||||||||| || | ||||| |||| ||| | | || |||| Sbjct 3625638 AGTAATATGGAGTTGTTGTAGATAAACTGTCGATAGTCGTACTCTTGGTCT-TCGATCTG 3625580 Query 9063 AAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9122 ||| | || |||| || | ||||||||| || | |||||||||| | | ||||| Sbjct 3625579 AAAGGTGTCAGGCAAAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCAATACG 3625520 Query 9123 ATTTTGGTACTGGAA 9137 |||||||||||||| Sbjct 3625519 GTTTTGGTACTGGAA 3625505 >seq61 Length=7832668 Score = 122 bits (134), Expect = 1e-22 Identities = 211/307 (69%), Gaps = 0/307 (0%) Strand=Plus/Minus Query 8278 ATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTG 8337 |||||| || ||||| || | | ||||| |||| |||| ||||| || || Sbjct 7577825 ATCGGGCACACGGAAGGCAACGTAGGGACAAGTCTTGGTGTTGAGGCAGACCAGCTTCTT 7577766 Query 8338 AATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCA 8397 | || || | ||||| || ||| |||| || || || || ||||| | |||||| Sbjct 7577765 CAGTGTGGCCGTTTTGACAATGTTGAAGCCCATCTCGCCACCAAATGTGCTTGACTTCCA 7577706 Query 8398 GTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAA 8457 |||| |||| || |||||| ||| ||| |||||| |||||||| || |||||||| | Sbjct 7577705 GTACTCCGGAGAACAGATGGGATTCCCCAAGAGGCCCTTGAGGGAAAAGGGAGCCCCAAT 7577646 Query 8458 CTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGT 8517 || | || || || || ||||||| ||| ||| || ||| || | | | ||| | Sbjct 7577645 TTCTATCATACTTTCCCCAAAGATGGAGTTTGGATGGCACTTCTCAAGAAGCAGTCCCGG 7577586 Query 8518 GTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTT 8577 || | ||||| || || | ||||||||| | || | || || || |||||||| Sbjct 7577585 ATAGAACTCCAAGGCATCAATGTCTCCGTACAACTCCTCCAACTCAGCTGCCATCTCCTT 7577526 Query 8578 TTCTCCT 8584 ||||||| Sbjct 7577525 TTCTCCT 7577519 Score = 100 bits (110), Expect = 4e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||||| |||||| || || |||||||| || |||||||| | ||| || || Sbjct 7570528 TCACCGATAAGGATGAGGCGGGTCGTCTGGAAGAGCTGCTCGTCGCCCCAGGTAGGGTGC 7570469 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | || ||||| | |||||| || | ||||||| ||||| || | | Sbjct 7570468 TCAGCCTTCAGCAGGTCACACACGCGGTTGTGCTCACGCAGCCAGAGCGTGGCATAGAGC 7570409 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 ||||||||||| | |||||| || |||| || || || |||| Sbjct 7570408 ATGAGCCCAGGAAGCAGGCCGAACACCTCCTGGCCCACTGCCA 7570366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716553363109760