Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pteropus_20vampyrus_20[refseq_20GCF_5F000151845.1_202014-12-05] 36,094 sequences; 2,198,284,804 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq149 122 2e-22 seq12 107 5e-18 seq7 105 2e-17 >seq149 Length=3750918 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || ||||| || | ||||| |||||||| ||| ||| || Sbjct 2394105 CAGATTTTCGTGAAAACCCTTACAGGGAAGATCATCACTCTCGAGGTTGAACCCTCGGAT 2394046 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||| | || |||| ||| ||||| || |||||| Sbjct 2394045 ACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAGAAATTCCTCCTGATCAGCAA 2393986 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| | ||| || || || || || ||||||||| | ||||| | || || ||| | Sbjct 2393985 AGACTGACCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTCTGTCTGACTACAACATT 2393926 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| | || || || |||| | | ||| Sbjct 2393925 CAAAAGTAGTCCACGCTTCATCCTATGTTG 2393896 >seq12 Length=16976894 Score = 107 bits (118), Expect = 5e-18 Identities = 150/207 (72%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || ||||| || || | || || || ||||| | |||||| | || ||| Sbjct 6395600 CAAATCTTTGTGAAGACCCTGATGGGCAAGACCATCACACACGAGGTCCA--GCCCAGTG 6395657 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||| ||||||||| || | || ||||| || || ||||| || ||||||| Sbjct 6395658 ACACCATCGAAAACGTCAAAGCTAAAACCCAAGACAAGGAGGGCATCCCACCTGACCAGC 6395717 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || | || ||||| |||||||| || |||| | |||| | || ||||| Sbjct 6395718 AGCGTCTGAGTTTTGCCGGCAAACAGCTGGAGAATGGCCGCACTCCCTCAGACTATAATA 6395777 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| || || ||||| |||| Sbjct 6395778 TCCAGAAAGAGTCCACCCTGCA-CTTG 6395803 >seq7 Length=17524079 Score = 105 bits (116), Expect = 2e-17 Identities = 155/216 (72%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||| || | ||| || || |||| |||| ||| ||| |||| Sbjct 1247922 CAAATTTTCGTGAAAACCCTTATAGGGAAGACTATCATTCTCGTGGTTGAAGCTTCAGTT 1247863 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || || || || ||||| ||||| || |||||||| ||| | || ||||| Sbjct 1247862 ACAACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTTCTGATCAGCA- 1247804 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | | ||| || || || || || |||||||| | || |||| | || || ||| | Sbjct 1247803 -GATTGACCTTTGCTGGCAAGCAACTGGAAGATGGGCGTAC-CTTGTCTGACTACAACAT 1247746 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || ||| ||| |||||||| Sbjct 1247745 TCAAAAGGAGTCCACTCTTCATGTTGCGTTGAGACT 1247710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203174529240236