Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq15580 114 1e-20 seq85480 102 8e-17 seq14641 84.2 2e-11 >seq15580 Length=3375 Score = 114 bits (126), Expect = 1e-20 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | ||| ||||| |||| ||||| Sbjct 3262 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTTTTCT 3321 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAG 16334 ||||||||||||| |||||||| || ||||| ||||| || || || |||| Sbjct 3322 TTAACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAG 3372 >seq85480 Length=19824 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| ||||||||||||||||| || | || ||||| |||||||||||| Sbjct 17791 TCATCTCTGCTAATAAGTTCGTTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 17732 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||| | ||||| || || |||||||| || || || || | |||||||| Sbjct 17731 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAGC 17673 >seq14641 Length=5504 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 16003 TATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACA 16062 || ||| ||| | || ||||||| || |||||| || ||||||||||| ||||| || Sbjct 2679 TACCTTTGAGAATCCAAGTTCCGCAAGTAATCTGTCAGCTACAAATTCAATATACTGTTT 2620 Query 16063 CATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAA 16116 ||| || | ||||| ||||| ||||||| || || | |||| ||||||||| Sbjct 2619 CATCAAAACACAATTCATTCCAATAAGTCCAACTGGCAAGGCTTCTGTTAAAAA 2566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510388374860000