Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq128334 306 3e-78 seq95730 149 5e-31 seq112790 116 3e-21 >seq128334 Length=22885 Score = 306 bits (338), Expect = 3e-78 Identities = 402/554 (73%), Gaps = 15/554 (3%) Strand=Plus/Minus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||| || |||||||||||||||||| ||||| | |||||| || || |||| Sbjct 12990 ATTAATCATTGTTTGTATATACTTCAAATTTGTATTTAATGCCTTTCTCCTCCTGGACAT 12931 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 |||| | | ||| |||||| | |||||| |||||||| | | || | |||||| Sbjct 12930 CAGAATTTCCTCCTGGGTATTCTGGGAGAAGTTTATATTTCTCCAAAGCAGTTCCTGGAA 12871 Query 4088 AAAAG--GTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCA 4145 |||| ||||||| ||||| || || ||||| || ||| |||| | || Sbjct 12870 AAAACATGTGTCACTGTCAAATTC----------CTTGTCACGAATAGTCTAAGGTGGCC 12821 Query 4146 TGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTAC 4205 ||| | |||| ||||| ||||| ||||||| ||| | | ||||| ||||||| || Sbjct 12820 TGGCTTGTTCATGGCTTCCTTATAATCAGAACTGCCTTCCACCATCCAAGCCATGTCCAC 12761 Query 4206 TTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAA 4265 || |||| ||||||||| || || |||||||| ||||||||||| | ||| | || | Sbjct 12760 TTGGTTTGTTAATTCTGGTTGCTCAGTAAGTTTCAAAGCATCATCCAGACTTTGGGCAAG 12701 Query 4266 AAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCC 4325 ||||||| ||| || || | ||||| ||||| | ||||||| | |||||| ||| | Sbjct 12700 AAAATGAACTCCTTGCAGAGGTTCCTTGAGTTCTCTATTGAGAACTAAATTAATCCTGTC 12641 Query 4326 TTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAA 4385 |||||||| | ||||||||||||| |||||||| || ||| ||||||||||||| || Sbjct 12640 CTTTAAAGGTTGATTCTTCTCAGGAACGGAGAACCAGGTATTTCTACCCATAATCAC-AA 12582 Query 4386 ATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATT 4445 |||| || | ||| | | ||| || ||||||||||| |||| ||| || ||||| Sbjct 12581 ATTCGGTGTTTCTTCTGCTCAAGGGGTTAAGGTCATTCTTTGAAAATATTTTAATTCATT 12522 Query 4446 CATAAGTCTTGGCCAAGGCAAGTTACCT-TGTTTGCCAATGCCCATGTTTTGAGCTACAG 4504 | || ||||| || | || ||| | ||| | ||||||||| || | ||||| Sbjct 12521 CCCGAG-AGGGGCCAGGGTAGGTCTCCTATTCCTGCGGACGCCCATGTTCTGGGATACAG 12463 Query 4505 CAACAATGCAGTTT 4518 | | ||||||||| Sbjct 12462 CGATGATGCAGTTT 12449 >seq95730 Length=15968 Score = 149 bits (164), Expect = 5e-31 Identities = 177/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 26933 CTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCAT 26992 || ||| || ||| | | || ||||| | || || || ||||| ||| || ||||| Sbjct 3543 CTCTTAAGCTGCATGGAGGACCATGGGTTTGACACAGGTACAGCCCACATCTACCAGCAT 3602 Query 26993 CTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTC 27052 |||||| |||| || |||| |||||| || || | | |||| || || ||||| Sbjct 3603 CTTCTCCAGCCGGAAGGAATGGGGGCAGTTCCGAGGCTCCCTTCGCAGGACCAGGATCTC 3662 Query 27053 TTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCC 27112 ||| ||||| | || ||||||| ||||| ||||| ||||| |||||||| ||||| Sbjct 3663 TTGCTGGATGGCAACGGAGTTCAGGTGGTGGTCTAGCTTCCCTTCAGCATTGACACAGAA 3722 Query 27113 TAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 |||| ||| ||||| || ||||| ||||||||||||||||| || | || |||||||| Sbjct 3723 CAAGTGGCGGCACTTCGCCTCCCAGATCACAGAGGGATATCTCTCGGGGTCCTCATTGCG 3782 >seq112790 Length=25949 Score = 116 bits (128), Expect = 3e-21 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| || |||||||| | |||||| ||| |||||||| || ||||||||||| Sbjct 23652 CTTGAGTTCTTTACTGAGAACTAAATTAATCCTGTTCTTTAAAGGTCGATTCTTCTCAGG 23711 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| ||||||||||||| |||||||| ||| || Sbjct 23712 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGCTTACCT 23760 Score = 111 bits (122), Expect = 1e-19 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| |||||||| | ||||| |||||||||||| | ||||| |||||| |||||||| Sbjct 14208 AAGTTTATATTTCTCCAAATCAATTTCTGGAAAAAATGCGTCACTTTCAAATTCTTGCAT 14267 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 |||||| |||||||| ||| ||| || || ||| | |||| ||||| || Sbjct 14268 GATCCTTGTCACAAATAGTCTAACATGGCCTGGCTTGTTCATGGCTTCCTT 14318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360544558785500