Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq95845 134 2e-26
seq85480 132 6e-26
seq88024 105 8e-18
seq124007 96.9 4e-15
seq15580 86.0 7e-12
>seq95845
Length=12527
Score = 134 bits (148), Expect = 2e-26
Identities = 112/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209
|| ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| |
Sbjct 950 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATG 891
Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269
|||||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||
Sbjct 890 GACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 831
Query 53270 CTATTTCTAAGACCGTA 53286
|||||||| | ||| ||
Sbjct 830 CTATTTCTTATACCATA 814
>seq85480
Length=19824
Score = 132 bits (146), Expect = 6e-26
Identities = 111/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| ||||| ||||| | |||||||||||||||||| || ||||| || || || || |
Sbjct 17793 CCTCATCTCTGCTAATAAGTTCGTTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 17734
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| ||||| ||||| || ||||| || ||||||||||| |||||||||||||| ||||| |
Sbjct 17733 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAG 17674
Query 24277 CAATAAGTCTTTCTCC 24292
| | || | ||||||
Sbjct 17673 CTACAACACGTTCTCC 17658
Score = 93.3 bits (102), Expect = 5e-14
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454
|||||| | || || ||||| | ||||||||||| || ||||| |||||||| |||||
Sbjct 15901 ATCTTTGATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGTATGTTTTCCATGGC 15842
Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500
||||| || || |||||||| | || || |||||||| ||||||
Sbjct 15841 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCT 15796
>seq88024
Length=2735
Score = 105 bits (116), Expect = 8e-18
Identities = 179/257 (70%), Gaps = 7/257 (3%)
Strand=Plus/Plus
Query 21883 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 21940
||| || || ||||| ||| ||| | ||| | |||| ||||| | ||| |||||
Sbjct 1808 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTTAGTGTA--ATCTAAAACTTGAACTTCC 1865
Query 21941 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 22000
| | ||| || ||| | || |||| | | || ||||| || |||| ||| ||| | ||
Sbjct 1866 TCTATTTCAGGGTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 1925
Query 22001 ACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 22060
|| | ||| | | ||| ||| ||||| || | || || |||||||| || ||||||
Sbjct 1926 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCCATATTTCCTCTGTAATCT 1985
Query 22061 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 22117
|||||||| ||||| |||||| ||| || | |||| | || ||||| | |||
Sbjct 1986 TCGTCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGTAGCCAATCCAGAACGTGGA 2045
Query 22118 GCTATTCTACCATAGCA 22134
|||| ||| ||||| ||
Sbjct 2046 GCTACTCTTCCATAACA 2062
>seq124007
Length=20016
Score = 96.9 bits (106), Expect = 4e-15
Identities = 113/153 (74%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084
|| |||||||||||| |||||||| ||||||||||| || | || || || |||| |
Sbjct 14160 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 14101
Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144
|| || || |||||||| ||||| || | ||| || ||| | | || || |||||||
Sbjct 14100 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 14041
Query 54145 CGGTTCCAAGTATATGGTCATAACTCCAGGCCG 54177
|| |||||||| || | | ||||||| ||
Sbjct 14040 AGGCTCCAAGTAAATAGCAAATGCTCCAGGTCG 14008
Score = 91.5 bits (100), Expect = 2e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449
|| || || ||||| || | || || || || ||||| || || || || || || |||
Sbjct 18915 TAGGTTTCATATGGGCCATGCTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATAA 18856
Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509
||||||||||| ||||| | |||||| | || || || | || ||||| |||||
Sbjct 18855 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 18796
Query 53510 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 53569
| | |||||||| || ||||| | ||||| || ||||| || || || | ||| |
Sbjct 18795 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACTCCAATTCCAATGGGGCGATGGCGT 18736
Query 53570 TTATTAGA 53577
||||| ||
Sbjct 18735 TTATTTGA 18728
Score = 84.2 bits (92), Expect = 3e-11
Identities = 118/166 (71%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827
|||| || | ||| || ||||||||||| | || || || || || || || || | ||
Sbjct 2866 CACTGAACACTTTCTTCGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAAAA 2807
Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887
|||| || || || || | ||||| | || || ||| |||| || | || ||| || |
Sbjct 2806 TGGCGTAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 2747
Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933
||| || || || || ||| | |||| |||||||| || |||||
Sbjct 2746 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2701
>seq15580
Length=3375
Score = 86.0 bits (94), Expect = 7e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218
|| ||||| || || | ||| |||||||| ||||| || ||||| || || | || ||
Sbjct 3264 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTTTTCTTT 3323
Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 24268
| ||| ||||| | ||||| ||||| || ||||||||||||||||| ||
Sbjct 3324 AACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGC 3373
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592530446040000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |