Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq67150 291 1e-73 seq75256 178 2e-39 seq75380 150 2e-31 >seq67150 Length=13541 Score = 291 bits (322), Expect = 1e-73 Identities = 556/804 (69%), Gaps = 29/804 (4%) Strand=Plus/Minus Query 176451 ACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCA 176510 || ||||| | ||| | || ||||| || ||||||||||| ||||| || || |||| Sbjct 9118 ACCAACATCTACCTGCTCAATTTGGCCATTTCTGACTTGCTCTTTCTATTCACCCTGCCC 9059 Query 176511 TTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAA 176570 || ||||| ||||| | | || | |||| ||| |||||| || | ||||||| Sbjct 9058 TTCTGGATTCACTACGTCA-AGTGGA--ATGAGTGGGTTTTTGGCCATTGCATGTGTAAG 9002 Query 176571 CTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTA 176630 |||||| || ||| ||||||| ||||| | || ||||| |||||||||||| Sbjct 9001 CTGCTCTCAGGGTTGTATTACATGGGCTTGTACGGGGAGACCTTTTTCATCATCCTGCTG 8942 Query 176631 ACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTA 176690 || ||||| ||||||| || | ||| | ||||| ||| || || | | || || Sbjct 8941 ACGATAGACCGGTATCTGGCCATCGTCCACGCTGTGTTTGCCCTGCGGGTCCGGACCGTC 8882 Query 176691 ACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCT 176750 || | ||| || | | | |||| |||||| ||||||||| || |||||||| Sbjct 8881 ACTTTTGGTATCATAAGCAGTGTCCTCACCTGGGCCCTGGCAGGGCTGGCAGCCCTCCCT 8822 Query 176751 GAATTTTTCTTTCATGGACACCAAGATGACAATGGT-AGGGTT----CAGTGTGATCCTT 176805 |||||| |||| |||| |||||| || || |||||| |||| | | ||| Sbjct 8821 GAATTTATCTTCCATGAGTTCCAAGAGGAGTCTGAACAGGGTTTCTGCAGT-TCA--CTT 8765 Query 176806 ACTACCCAGAGATGTCTACAA--ATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTAT 176863 ||||||||| | | | | | | |||| ||| |||| || | | ||| | | Sbjct 8764 --TACCCAGAG--GACGAAGAGGACGCCTGGAAGCGTTTTCACGCTGTGAGGATGAATGT 8709 Query 176864 GTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAG 176923 || |||||| | ||||||||||||||||||||||||||||| | ||| || | || Sbjct 8708 CTTGGGTCTCACTCTGCCTCTGCTCATTATGGCTGTCTGCTACGCCGGAATCATTAAAAC 8649 Query 176924 ACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCAT 176983 || | | | ||||||| | ||| ||||| ||||||||| ||||||| ||| ||||||| Sbjct 8648 CCTCATCAAGTGCCCCAGTAGGAAAAAGTATAAGGCCATCCGGCTCATTTTTATCATCAT 8589 Query 176984 GGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCA 177043 ||||| || ||| |||| ||| ||| |||||| | |||||||| || || | | ||| Sbjct 8588 GGTGGTCTTTTTCATTTTCTGGGGACCTTACAACCTGGTTCTCCTTCTCTCCGCTTATCA 8529 Query 177044 CGCAAC--CCTTCTT---AACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTG 177098 ||| |||||| ||| | ||| || ||||| | |||| |||| || Sbjct 8528 ---AACGGTCTTCTTTGAGACCGACTGTGAGC--GGAGCAAACAGCTGGATGTGGCCATG 8474 Query 177099 CTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTC 177158 ||| | || | | |||||||||||||| ||| ||||||| ||||||||||| || Sbjct 8473 CTGGTGACGGAGGTGATCGCCTACACACACTGCTGCGTCAACCCTGTGATCTACGCCTTT 8414 Query 177159 GTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGG-CCATCTA 177217 || || |||| ||| | ||||| |||||| ||||||| || ||| ||| | Sbjct 8413 GTCGGAGAGAGGTTCCGGGAGCACCTCCGCCACTTTTTCCACAGGCACATGGTCCAGC-C 8355 Query 177218 CCTCTGCAAGTACATCCCCTTCCT 177241 ||| |||| ||||| || ||||| Sbjct 8354 CCTGGGCAAATACATTCCATTCCT 8331 Score = 291 bits (322), Expect = 1e-73 Identities = 556/804 (69%), Gaps = 29/804 (4%) Strand=Plus/Minus Query 9565 ACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCA 9624 || ||||| | ||| | || ||||| || ||||||||||| ||||| || || |||| Sbjct 9118 ACCAACATCTACCTGCTCAATTTGGCCATTTCTGACTTGCTCTTTCTATTCACCCTGCCC 9059 Query 9625 TTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAA 9684 || ||||| ||||| | | || | |||| ||| |||||| || | ||||||| Sbjct 9058 TTCTGGATTCACTACGTCA-AGTGGA--ATGAGTGGGTTTTTGGCCATTGCATGTGTAAG 9002 Query 9685 CTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTA 9744 |||||| || ||| ||||||| ||||| | || ||||| |||||||||||| Sbjct 9001 CTGCTCTCAGGGTTGTATTACATGGGCTTGTACGGGGAGACCTTTTTCATCATCCTGCTG 8942 Query 9745 ACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTA 9804 || ||||| ||||||| || | ||| | ||||| ||| || || | | || || Sbjct 8941 ACGATAGACCGGTATCTGGCCATCGTCCACGCTGTGTTTGCCCTGCGGGTCCGGACCGTC 8882 Query 9805 ACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCT 9864 || | ||| || | | | |||| |||||| ||||||||| || |||||||| Sbjct 8881 ACTTTTGGTATCATAAGCAGTGTCCTCACCTGGGCCCTGGCAGGGCTGGCAGCCCTCCCT 8822 Query 9865 GAATTTTTCTTTCATGGACACCAAGATGACAATGGT-AGGGTT----CAGTGTGATCCTT 9919 |||||| |||| |||| |||||| || || |||||| |||| | | ||| Sbjct 8821 GAATTTATCTTCCATGAGTTCCAAGAGGAGTCTGAACAGGGTTTCTGCAGT-TCA--CTT 8765 Query 9920 ACTACCCAGAGATGTCTACAA--ATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTAT 9977 ||||||||| | | | | | | |||| ||| |||| || | | ||| | | Sbjct 8764 --TACCCAGAG--GACGAAGAGGACGCCTGGAAGCGTTTTCACGCTGTGAGGATGAATGT 8709 Query 9978 GTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAG 10037 || |||||| | ||||||||||||||||||||||||||||| | ||| || | || Sbjct 8708 CTTGGGTCTCACTCTGCCTCTGCTCATTATGGCTGTCTGCTACGCCGGAATCATTAAAAC 8649 Query 10038 ACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCAT 10097 || | | | ||||||| | ||| ||||| ||||||||| ||||||| ||| ||||||| Sbjct 8648 CCTCATCAAGTGCCCCAGTAGGAAAAAGTATAAGGCCATCCGGCTCATTTTTATCATCAT 8589 Query 10098 GGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCA 10157 ||||| || ||| |||| ||| ||| |||||| | |||||||| || || | | ||| Sbjct 8588 GGTGGTCTTTTTCATTTTCTGGGGACCTTACAACCTGGTTCTCCTTCTCTCCGCTTATCA 8529 Query 10158 CGCAAC--CCTTCTT---AACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTG 10212 ||| |||||| ||| | ||| || ||||| | |||| |||| || Sbjct 8528 ---AACGGTCTTCTTTGAGACCGACTGTGAGC--GGAGCAAACAGCTGGATGTGGCCATG 8474 Query 10213 CTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTC 10272 ||| | || | | |||||||||||||| ||| ||||||| ||||||||||| || Sbjct 8473 CTGGTGACGGAGGTGATCGCCTACACACACTGCTGCGTCAACCCTGTGATCTACGCCTTT 8414 Query 10273 GTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGG-CCATCTA 10331 || || |||| ||| | ||||| |||||| ||||||| || ||| ||| | Sbjct 8413 GTCGGAGAGAGGTTCCGGGAGCACCTCCGCCACTTTTTCCACAGGCACATGGTCCAGC-C 8355 Query 10332 CCTCTGCAAGTACATCCCCTTCCT 10355 ||| |||| ||||| || ||||| Sbjct 8354 CCTGGGCAAATACATTCCATTCCT 8331 >seq75256 Length=16458 Score = 178 bits (196), Expect = 2e-39 Identities = 143/173 (83%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| |||| ||| |||| ||||||||| ||||||||||||||||| |||||||| ||| Sbjct 6374 AGGCCAGTGATGTGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAAGGC 6433 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 |||||||| |||||||| | || | ||| |||||||||||||| ||||| ||| | || Sbjct 6434 ACCCCCAGGCCCATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCGCCGTTCACC 6493 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTC 145922 |||||||||||||| ||| ||||| || || ||||||||| ||||| || Sbjct 6494 ACGTAGAACTGGCAAAGGGCATGGCACGGAGGTAGGGCCATGAGAGGCAGATC 6546 >seq75380 Length=28474 Score = 150 bits (166), Expect = 2e-31 Identities = 129/157 (82%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 |||||||| ||||||| |||||| || || || |||||||| ||||||||||| | | | Sbjct 11203 CAGCGCCTGAGCCTCAGCCTGAGCGTCTTCAGGTTTTCCCCGAGGGAGTTCACGTGCTTC 11144 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || || | ||| || | |||| |||||||||||||||||||||| |||||||||| Sbjct 11143 TTGATCTC-TGGGTCCTC--GCTCTCAGCCTGGGGCATCACCTCCTCCAAGTAAAACTGG 11087 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 |||||||| |||| ||| ||||| ||||||||||||| Sbjct 11086 ATCATCTCCGACAAGGCTTGGCAACCCAGGTAACCCT 11050 Score = 111 bits (122), Expect = 2e-19 Identities = 82/96 (85%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 137921 CTCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACT 137980 || ||||||||||| | ||||||||||| ||||||||||| |||||||| || |||| Sbjct 13403 CTTAGTTTTTCATCCTCCGTGTCATGTAGGCTTCTATGTAGTTGATGAAGATATCGAACT 13344 Query 137981 CGCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 | |||||||| |||||||||||||| || ||||||| Sbjct 13343 CACTCATGGCTTTGTAGACCCCTTTCTCTTGGAGCT 13308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588892958420000