Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq67150 291 1e-73
seq75256 178 2e-39
seq75380 150 2e-31
>seq67150
Length=13541
Score = 291 bits (322), Expect = 1e-73
Identities = 556/804 (69%), Gaps = 29/804 (4%)
Strand=Plus/Minus
Query 176451 ACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCA 176510
|| ||||| | ||| | || ||||| || ||||||||||| ||||| || || ||||
Sbjct 9118 ACCAACATCTACCTGCTCAATTTGGCCATTTCTGACTTGCTCTTTCTATTCACCCTGCCC 9059
Query 176511 TTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAA 176570
|| ||||| ||||| | | || | |||| ||| |||||| || | |||||||
Sbjct 9058 TTCTGGATTCACTACGTCA-AGTGGA--ATGAGTGGGTTTTTGGCCATTGCATGTGTAAG 9002
Query 176571 CTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTA 176630
|||||| || ||| ||||||| ||||| | || ||||| ||||||||||||
Sbjct 9001 CTGCTCTCAGGGTTGTATTACATGGGCTTGTACGGGGAGACCTTTTTCATCATCCTGCTG 8942
Query 176631 ACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTA 176690
|| ||||| ||||||| || | ||| | ||||| ||| || || | | || ||
Sbjct 8941 ACGATAGACCGGTATCTGGCCATCGTCCACGCTGTGTTTGCCCTGCGGGTCCGGACCGTC 8882
Query 176691 ACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCT 176750
|| | ||| || | | | |||| |||||| ||||||||| || ||||||||
Sbjct 8881 ACTTTTGGTATCATAAGCAGTGTCCTCACCTGGGCCCTGGCAGGGCTGGCAGCCCTCCCT 8822
Query 176751 GAATTTTTCTTTCATGGACACCAAGATGACAATGGT-AGGGTT----CAGTGTGATCCTT 176805
|||||| |||| |||| |||||| || || |||||| |||| | | |||
Sbjct 8821 GAATTTATCTTCCATGAGTTCCAAGAGGAGTCTGAACAGGGTTTCTGCAGT-TCA--CTT 8765
Query 176806 ACTACCCAGAGATGTCTACAA--ATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTAT 176863
||||||||| | | | | | | |||| ||| |||| || | | ||| | |
Sbjct 8764 --TACCCAGAG--GACGAAGAGGACGCCTGGAAGCGTTTTCACGCTGTGAGGATGAATGT 8709
Query 176864 GTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAG 176923
|| |||||| | ||||||||||||||||||||||||||||| | ||| || | ||
Sbjct 8708 CTTGGGTCTCACTCTGCCTCTGCTCATTATGGCTGTCTGCTACGCCGGAATCATTAAAAC 8649
Query 176924 ACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCAT 176983
|| | | | ||||||| | ||| ||||| ||||||||| ||||||| ||| |||||||
Sbjct 8648 CCTCATCAAGTGCCCCAGTAGGAAAAAGTATAAGGCCATCCGGCTCATTTTTATCATCAT 8589
Query 176984 GGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCA 177043
||||| || ||| |||| ||| ||| |||||| | |||||||| || || | | |||
Sbjct 8588 GGTGGTCTTTTTCATTTTCTGGGGACCTTACAACCTGGTTCTCCTTCTCTCCGCTTATCA 8529
Query 177044 CGCAAC--CCTTCTT---AACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTG 177098
||| |||||| ||| | ||| || ||||| | |||| |||| ||
Sbjct 8528 ---AACGGTCTTCTTTGAGACCGACTGTGAGC--GGAGCAAACAGCTGGATGTGGCCATG 8474
Query 177099 CTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTC 177158
||| | || | | |||||||||||||| ||| ||||||| ||||||||||| ||
Sbjct 8473 CTGGTGACGGAGGTGATCGCCTACACACACTGCTGCGTCAACCCTGTGATCTACGCCTTT 8414
Query 177159 GTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGG-CCATCTA 177217
|| || |||| ||| | ||||| |||||| ||||||| || ||| ||| |
Sbjct 8413 GTCGGAGAGAGGTTCCGGGAGCACCTCCGCCACTTTTTCCACAGGCACATGGTCCAGC-C 8355
Query 177218 CCTCTGCAAGTACATCCCCTTCCT 177241
||| |||| ||||| || |||||
Sbjct 8354 CCTGGGCAAATACATTCCATTCCT 8331
Score = 291 bits (322), Expect = 1e-73
Identities = 556/804 (69%), Gaps = 29/804 (4%)
Strand=Plus/Minus
Query 9565 ACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCA 9624
|| ||||| | ||| | || ||||| || ||||||||||| ||||| || || ||||
Sbjct 9118 ACCAACATCTACCTGCTCAATTTGGCCATTTCTGACTTGCTCTTTCTATTCACCCTGCCC 9059
Query 9625 TTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAA 9684
|| ||||| ||||| | | || | |||| ||| |||||| || | |||||||
Sbjct 9058 TTCTGGATTCACTACGTCA-AGTGGA--ATGAGTGGGTTTTTGGCCATTGCATGTGTAAG 9002
Query 9685 CTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTA 9744
|||||| || ||| ||||||| ||||| | || ||||| ||||||||||||
Sbjct 9001 CTGCTCTCAGGGTTGTATTACATGGGCTTGTACGGGGAGACCTTTTTCATCATCCTGCTG 8942
Query 9745 ACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTA 9804
|| ||||| ||||||| || | ||| | ||||| ||| || || | | || ||
Sbjct 8941 ACGATAGACCGGTATCTGGCCATCGTCCACGCTGTGTTTGCCCTGCGGGTCCGGACCGTC 8882
Query 9805 ACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCT 9864
|| | ||| || | | | |||| |||||| ||||||||| || ||||||||
Sbjct 8881 ACTTTTGGTATCATAAGCAGTGTCCTCACCTGGGCCCTGGCAGGGCTGGCAGCCCTCCCT 8822
Query 9865 GAATTTTTCTTTCATGGACACCAAGATGACAATGGT-AGGGTT----CAGTGTGATCCTT 9919
|||||| |||| |||| |||||| || || |||||| |||| | | |||
Sbjct 8821 GAATTTATCTTCCATGAGTTCCAAGAGGAGTCTGAACAGGGTTTCTGCAGT-TCA--CTT 8765
Query 9920 ACTACCCAGAGATGTCTACAA--ATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTAT 9977
||||||||| | | | | | | |||| ||| |||| || | | ||| | |
Sbjct 8764 --TACCCAGAG--GACGAAGAGGACGCCTGGAAGCGTTTTCACGCTGTGAGGATGAATGT 8709
Query 9978 GTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAG 10037
|| |||||| | ||||||||||||||||||||||||||||| | ||| || | ||
Sbjct 8708 CTTGGGTCTCACTCTGCCTCTGCTCATTATGGCTGTCTGCTACGCCGGAATCATTAAAAC 8649
Query 10038 ACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCAT 10097
|| | | | ||||||| | ||| ||||| ||||||||| ||||||| ||| |||||||
Sbjct 8648 CCTCATCAAGTGCCCCAGTAGGAAAAAGTATAAGGCCATCCGGCTCATTTTTATCATCAT 8589
Query 10098 GGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCA 10157
||||| || ||| |||| ||| ||| |||||| | |||||||| || || | | |||
Sbjct 8588 GGTGGTCTTTTTCATTTTCTGGGGACCTTACAACCTGGTTCTCCTTCTCTCCGCTTATCA 8529
Query 10158 CGCAAC--CCTTCTT---AACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTG 10212
||| |||||| ||| | ||| || ||||| | |||| |||| ||
Sbjct 8528 ---AACGGTCTTCTTTGAGACCGACTGTGAGC--GGAGCAAACAGCTGGATGTGGCCATG 8474
Query 10213 CTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTC 10272
||| | || | | |||||||||||||| ||| ||||||| ||||||||||| ||
Sbjct 8473 CTGGTGACGGAGGTGATCGCCTACACACACTGCTGCGTCAACCCTGTGATCTACGCCTTT 8414
Query 10273 GTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGG-CCATCTA 10331
|| || |||| ||| | ||||| |||||| ||||||| || ||| ||| |
Sbjct 8413 GTCGGAGAGAGGTTCCGGGAGCACCTCCGCCACTTTTTCCACAGGCACATGGTCCAGC-C 8355
Query 10332 CCTCTGCAAGTACATCCCCTTCCT 10355
||| |||| ||||| || |||||
Sbjct 8354 CCTGGGCAAATACATTCCATTCCT 8331
>seq75256
Length=16458
Score = 178 bits (196), Expect = 2e-39
Identities = 143/173 (83%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809
||||| |||| ||| |||| ||||||||| ||||||||||||||||| |||||||| |||
Sbjct 6374 AGGCCAGTGATGTGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAAGGC 6433
Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869
|||||||| |||||||| | || | ||| |||||||||||||| ||||| ||| | ||
Sbjct 6434 ACCCCCAGGCCCATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCGCCGTTCACC 6493
Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTC 145922
|||||||||||||| ||| ||||| || || ||||||||| ||||| ||
Sbjct 6494 ACGTAGAACTGGCAAAGGGCATGGCACGGAGGTAGGGCCATGAGAGGCAGATC 6546
>seq75380
Length=28474
Score = 150 bits (166), Expect = 2e-31
Identities = 129/157 (82%), Gaps = 3/157 (2%)
Strand=Plus/Minus
Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141
|||||||| ||||||| |||||| || || || |||||||| ||||||||||| | | |
Sbjct 11203 CAGCGCCTGAGCCTCAGCCTGAGCGTCTTCAGGTTTTCCCCGAGGGAGTTCACGTGCTTC 11144
Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201
|| || | ||| || | |||| |||||||||||||||||||||| ||||||||||
Sbjct 11143 TTGATCTC-TGGGTCCTC--GCTCTCAGCCTGGGGCATCACCTCCTCCAAGTAAAACTGG 11087
Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238
|||||||| |||| ||| ||||| |||||||||||||
Sbjct 11086 ATCATCTCCGACAAGGCTTGGCAACCCAGGTAACCCT 11050
Score = 111 bits (122), Expect = 2e-19
Identities = 82/96 (85%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 137921 CTCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACT 137980
|| ||||||||||| | ||||||||||| ||||||||||| |||||||| || ||||
Sbjct 13403 CTTAGTTTTTCATCCTCCGTGTCATGTAGGCTTCTATGTAGTTGATGAAGATATCGAACT 13344
Query 137981 CGCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016
| |||||||| |||||||||||||| || |||||||
Sbjct 13343 CACTCATGGCTTTGTAGACCCCTTTCTCTTGGAGCT 13308
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588892958420000
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