Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq14363 259 6e-64 seq61406 84.2 3e-11 >seq14363 Length=13196 Score = 259 bits (286), Expect = 6e-64 Identities = 260/338 (77%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||| || |||||||| ||||| | | | | ||| | ||||| |||||||||||||| Sbjct 10584 AGCAGAGCTTCGATGTCAGGCTCGATGTCGATGGTGGGAAAGCGGCGGCTGTACCTGCGC 10525 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| |||||| | ||||||| |||||| ||||||||||||| |||||||||||| Sbjct 10524 ACAGGCACGCCGTCCGGGCCCACCAGGAACTTTTCGAAGTTCCAGGAAACGTCGTTGCGG 10465 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 || || || |||||| |||| || ||||||| ||| ||||| | |||||| || Sbjct 10464 CATACCGGGGACCAGATGATGAACTTGGGGTCGGTCATGAGCGCAGTGGCGTCGTCACTG 10405 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||| ||||| | ||| || | ||| ||||| || || || ||| || || || ||| Sbjct 10404 GGCGCGGGCAGAGTCTCCCGCAAGAAAGCGAAAAGAGGGTGCGCCTGAGCGCCATTCACC 10345 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||||| | ||||| |||||||| ||| ||||| ||||||| ||| Sbjct 10344 TCGCACTTCTCGAAGAGCGTGAAGTTGGGCTCGAACCCGCCGCCAGGTCGGACGTACTTG 10285 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 |||||| || ||| || | |||| ||| || ||||| Sbjct 10284 AGGGAATTCAGGATTTCTTCGTTCTTGGCATTCTCCTG 10247 Score = 179 bits (198), Expect = 4e-40 Identities = 153/189 (81%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || ||||||||||||||||||||||| ||||| ||||| ||||| | || |||| Sbjct 10021 CCTGATGCCCGAACTGGTTACACGGGAACCCGAGCACGACCAGGCCCCGGGGCCCGAGGC 9962 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| ||||||||||| | |||||||| ||||| | Sbjct 9961 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGACGCCA 9902 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||| || |||| ||| |||||| | | |||| | | ||||||| || || || | Sbjct 9901 CATTCTCAATAAGCAGCACCTTGCCCCGCAGGGAGCCCAGGTTCACAGGGTCCCCGCCCG 9842 Query 83571 TAATCGGGC 83579 | ||||| Sbjct 9841 CCAGCGGGC 9833 >seq61406 Length=11383 Score = 84.2 bits (92), Expect = 3e-11 Identities = 198/290 (68%), Gaps = 13/290 (4%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| || |||| || |||| | ||| || ||| || ||||||||| ||| ||| Sbjct 2462 GCAGCTTCGCAGCATCTACGAGAGCA-GCCTGTCCATAGGCAACTTCGCCTCGCGCCTGC 2520 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| | | || || ||||| || || |||||||||| | ||| | ||||||| Sbjct 2521 TGGTGCATCTCTTCCCCGAGCTTTTCACCCATGAGAACCTGCGGAAGCAGTACAACTGCA 2580 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTC---CGGCAC 50584 |||||| |||||||| |||| || |||||| ||| | | |||| || ||| Sbjct 2581 GTGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGCAT---CAAGCTCATTCGCCAC 2636 Query 50585 TATGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTG 50644 || |||||| ||||| |||| ||| || || || || |||| |||| || Sbjct 2637 TACGTGCAGCTGCTGTACCCCCGGGCCAAGAATGACCGTGTCTGGACGCTGGAGTTTGTG 2696 Query 50645 GCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 | ||||||||||||||||||||||| |||||| || |||||| Sbjct 2697 GGCAAATTGGACGAGCGCTGCCGGCGCCGC--GACACGGAGCAGAGGCGC 2744 Score = 82.4 bits (90), Expect = 9e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 49919 TCCTCTCCCGGGGAGCTGGCGGTGCTCCTACTGCACAAGGTCTTCCAGGAGCTCTTTGAC 49978 ||||| ||||| ||| | || || |||| |||||| | |||||| ||||||||||||| Sbjct 2001 TCCTCACCCGGCGAGTTTGCCGTCTTCCTTCTGCACCGGCTCTTCCCGGAGCTCTTTGAC 2060 Query 49979 GCGCGCCAGCTGCGC-CGCTGCTACAGCTGCTACGGCGACGGGCGCACGCATTGTCTGGA 50037 || ||||| || || | |||||||||||||| || || ||| ||| ||||| Sbjct 2061 CACCGGAAGCTGGGCGAGCAG-TACAGCTGCTACGGGGATGGTGGCAAGCAGGAGCTGGA 2119 Query 50038 CCCTGCGCGCCTGCAACTGATCCG 50061 ||| ||| ||||| | ||||| Sbjct 2120 CCCGCAGCGGCTGCAGATCATCCG 2143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607575401420000