Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq63810 132 4e-26 seq104951 114 1e-20 seq74389 113 4e-20 seq48881 113 4e-20 seq2401 96.9 3e-15 seq113583 89.7 4e-13 seq32806 89.7 4e-13 seq123873 84.2 2e-11 seq89363 82.4 6e-11 >seq63810 Length=35167 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||||| || | ||| |||| |||| |||||||||||| || ||||| ||||| | | Sbjct 27915 CCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27974 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || |||||||||||||| ||| | || | | ||||||||| ||| Sbjct 27975 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGG 28034 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| || ||||| |||||| || || | ||| || |||| ||||||| Sbjct 28035 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 28094 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| ||| |||||||| ||||| || || || ||||| || |||||| Sbjct 28095 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCATT 28142 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||||| || | ||| |||| |||| |||||||||||| || ||||| ||||| | | Sbjct 27459 CCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27518 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || |||||||||||||| ||| | || | | ||||||||| ||| Sbjct 27519 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGG 27578 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| || ||||| |||||| || || | ||| || |||| ||||||| Sbjct 27579 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 27638 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||| ||||| || || || || || || ||||| Sbjct 27639 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27685 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||||| || | ||| |||| |||| ||||||||| || || ||||| ||||| | | Sbjct 27687 CCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 27746 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || |||||||||||||| ||| | || | | ||||||||| ||| Sbjct 27747 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGG 27806 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| || ||||| |||||| || || | ||| || |||| ||||||| Sbjct 27807 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 27866 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||| ||||| || || || || || || ||||| Sbjct 27867 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27913 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||||| |||||||||||| || ||||| ||||| | ||| || | | || Sbjct 27246 AGGACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCT 27305 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||||||||| ||| | || | ||||||||||| ||| ||| || ||||| Sbjct 27306 TCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGCTGCCCTCTTTGTCT 27365 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | ||| || |||| ||||||| |||| ||| |||| | Sbjct 27366 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGAC 27425 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | ||||| | || || || || || ||||| Sbjct 27426 TGACCGGTCGAGGTCTTCACGAAGATCTGCAT 27457 >seq104951 Length=12537 Score = 114 bits (126), Expect = 1e-20 Identities = 155/214 (72%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| ||||||||| || | ||||||||||| | || || || | ||| Sbjct 11031 AGCACCAAGTGCAGAGTGGACTCTTTCTCGATGTTATAGTCTGAGAGAGTGCGGCCATCC 11090 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||||||||||||| || |||| || | ||||||||| || | ||| |||||||| Sbjct 11091 TCCAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 11150 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC--CGTTTCCACGGTAATGG 21141 ||| || ||| || | | | ||| |||| |||||| | ||| | || |||| Sbjct 11151 TGGATTTTGGCTTTGACGTTTTCAATAGTGTCACTGGGCTCGACCTTT-GAGTGTGATGG 11209 Query 21142 TCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||||| || | ||||| |||| || ||||| Sbjct 11210 TCTTGCCTGTCAGGGTTTTCCCAAAGATCTGCAT 11243 >seq74389 Length=16610 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| ||||||||| || || || |||||||| | || || || | ||| Sbjct 10478 AGCACCAAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCC 10419 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| ||||||||| ||| |||| || || |||||| || | ||| ||||||| Sbjct 10418 TCCATCTGTTTGCCGGCAAAAATCAGATGCTCCTGGTCAGGTGGGATGCCCTCCTTGTGT 10359 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || ||| || | ||| ||| |||| |||||| | || | || |||||| Sbjct 10358 TGGATTTTAGCTTTGACATTCTCGATAGTGTCACTGGGCTCGATCTCAAGTGTGATGGTC 10299 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || || || ||||| || ||||| Sbjct 10298 TTGCCCGTCAAGGTCTTCACAAAGATCTGCAT 10267 >seq48881 Length=14873 Score = 113 bits (124), Expect = 4e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || ||||| || || ||||| ||||| | || || || | || Sbjct 7402 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 7461 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| ||| | ||| ||||| || Sbjct 7462 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 7521 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || || | ||||||| |||| ||| |||||| Sbjct 7522 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 7581 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||||| || | || || || || ||||||||||||| Sbjct 7582 TTGCCCGTCAGGGTCTTCACGAAAATTTGCATTTTGA 7618 >seq2401 Length=18371 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 20955 CGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTT 21014 ||||| | ||||||| |||| ||||||| | || || || |||||||| | || || Sbjct 365 CGCAGACGAAGCACCAAGTGCAGAGTGGACGCTTTCTGGATATTATAGTCTGAGAGAGTG 306 Query 21015 TGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCT 21074 || | ||||||||||||||||| ||| |||| || | ||||||||| || | || Sbjct 305 CGGCCATCCTCCAGCTGTTTGCCTGCAAAAATCAGACGCTGCTGGTCAGGTGGGATACCC 246 Query 21075 TCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACG 21134 ||||||| || || ||| || | | | ||| ||| |||| | || | | Sbjct 245 TCCTTGTTTTGGAGTTTAGCTTTGACATTCTCAATAGTGTCATTGGGCCCGACCTCAAGG 186 Query 21135 GTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||||||||| |||| || || ||| | || ||||| Sbjct 185 GTGATGGTCTTGCCTGTTAGGGTCTTCACACAGATCTGCAT 145 >seq113583 Length=22641 Score = 89.7 bits (98), Expect = 4e-13 Identities = 155/222 (70%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| |||||||| || || || |||||||| | || | | | | ||| Sbjct 17439 AGCACCAAGTGCACGGTGGACTCTTTCTGGATATTATAGTCTGAGAGTGCT--GCCATCC 17496 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||||||||||||| |||| || | |||||| || || | ||| |||| ||| Sbjct 17497 TCCAGCTGTTTGCCCGCACAAATCAGACGCTGCTGCTCAGGCGGGATGCCCTCCTGGTCT 17556 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| | ||| || || | ||| |||| |||||| || | || |||||| Sbjct 17557 TGGATTTGAGCTTTGACATGCTCAGTAGTGTCACTGGGCTCGACCTCGAGTGTGATGGTC 17616 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT-TTTGAATCT 21184 ||||| || | || || || || || ||||| | || |||| Sbjct 17617 TTGCCCGTCAGGGTCTTCAC-AAGATCTGCATCTCTGCATCT 17657 >seq32806 Length=18495 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| |||| |||| || || || || ||||| | || || || | || Sbjct 13613 AGCACCAAGTGCAGAGTGAACTCTTTCTGGATATTTTAGTCTGAGAGAGTGCGGCCATCG 13554 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||||||||||| ||| || | | | ||||||||| || | ||| ||||| || Sbjct 13553 TCCAGCTGTTTGCTGGCAAAAGTCCGACGCTGCTGGTCAGGTGGGATGCCCTCCTTATCT 13494 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 | | || ||| || | | | |||||||| ||||||| || | || |||||| Sbjct 13493 TGGGTTTTAGCTTTGACATTCTCAATAGTATCACTGGGCTCCACCTCGAGTGTGATGGTC 13434 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || ||||| || ||||| Sbjct 13433 TTGCCTGTCAGGGTCTTCACAAAGATGTGCAT 13402 >seq123873 Length=8769 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/98 (80%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| |||||||| || || || |||||||| | || || ||| | ||| Sbjct 315 AGCACCAAGTGCAG-GTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGTGGCCATCC 257 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061 |||||||||||||| ||| |||| || | ||||||||| Sbjct 256 TCCAGCTGTTTGCCTGCAAAAATCAGACGCTGCTGGTC 219 >seq89363 Length=18264 Score = 82.4 bits (90), Expect = 6e-11 Identities = 90/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| ||||||||| || || || ||||| || || || || | ||| Sbjct 15789 AGCACCAAGTGCAGAGTGGACTCTTTCTGGATATTATAATCTAAGAGAGT--GGCCATCC 15846 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 ||||||||||||||| || ||| |||| ||||||||| || | ||| |||||||| Sbjct 15847 TCCAGCTGTTTGCCCTCAAAAAGCAGTCGCTGCTGGTCAGATGGGATGCCCTCCTTGTC 15905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421433221418000