Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq63810 132 4e-26
seq104951 114 1e-20
seq74389 113 4e-20
seq48881 113 4e-20
seq2401 96.9 3e-15
seq113583 89.7 4e-13
seq32806 89.7 4e-13
seq123873 84.2 2e-11
seq89363 82.4 6e-11
>seq63810
Length=35167
Score = 132 bits (146), Expect = 4e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
||||||| || | ||| |||| |||| |||||||||||| || ||||| ||||| | |
Sbjct 27915 CCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27974
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | | || |||||||||||||| ||| | || | | ||||||||| |||
Sbjct 27975 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGG 28034
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| || ||||| |||||| || || | ||| || |||| |||||||
Sbjct 28035 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 28094
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176
|||| ||| |||||||| ||||| || || || ||||| || ||||||
Sbjct 28095 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCATT 28142
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
||||||| || | ||| |||| |||| |||||||||||| || ||||| ||||| | |
Sbjct 27459 CCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27518
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | | || |||||||||||||| ||| | || | | ||||||||| |||
Sbjct 27519 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGG 27578
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| || ||||| |||||| || || | ||| || |||| |||||||
Sbjct 27579 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 27638
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| ||| |||||||| ||||| || || || || || || |||||
Sbjct 27639 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27685
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
||||||| || | ||| |||| |||| ||||||||| || || ||||| ||||| | |
Sbjct 27687 CCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 27746
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | | || |||||||||||||| ||| | || | | ||||||||| |||
Sbjct 27747 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGG 27806
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| || ||||| |||||| || || | ||| || |||| |||||||
Sbjct 27807 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 27866
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| ||| |||||||| ||||| || || || || || || |||||
Sbjct 27867 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27913
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| |||| ||||| |||||||||||| || ||||| ||||| | ||| || | | ||
Sbjct 27246 AGGACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCT 27305
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||||||||| ||| | || | ||||||||||| ||| ||| || |||||
Sbjct 27306 TCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGCTGCCCTCTTTGTCT 27365
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| || || | ||| || |||| ||||||| |||| ||| |||| |
Sbjct 27366 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGAC 27425
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
| ||||| | || || || || || |||||
Sbjct 27426 TGACCGGTCGAGGTCTTCACGAAGATCTGCAT 27457
>seq104951
Length=12537
Score = 114 bits (126), Expect = 1e-20
Identities = 155/214 (72%), Gaps = 3/214 (1%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| |||| ||||||||| || | ||||||||||| | || || || | |||
Sbjct 11031 AGCACCAAGTGCAGAGTGGACTCTTTCTCGATGTTATAGTCTGAGAGAGTGCGGCCATCC 11090
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
||||||||||||||| || |||| || | ||||||||| || | ||| ||||||||
Sbjct 11091 TCCAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 11150
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC--CGTTTCCACGGTAATGG 21141
||| || ||| || | | | ||| |||| |||||| | ||| | || ||||
Sbjct 11151 TGGATTTTGGCTTTGACGTTTTCAATAGTGTCACTGGGCTCGACCTTT-GAGTGTGATGG 11209
Query 21142 TCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||||||| || | ||||| |||| || |||||
Sbjct 11210 TCTTGCCTGTCAGGGTTTTCCCAAAGATCTGCAT 11243
>seq74389
Length=16610
Score = 113 bits (124), Expect = 4e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| |||| ||||||||| || || || |||||||| | || || || | |||
Sbjct 10478 AGCACCAAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCC 10419
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||| ||||||||| ||| |||| || || |||||| || | ||| |||||||
Sbjct 10418 TCCATCTGTTTGCCGGCAAAAATCAGATGCTCCTGGTCAGGTGGGATGCCCTCCTTGTGT 10359
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
||| || ||| || | ||| ||| |||| |||||| | || | || ||||||
Sbjct 10358 TGGATTTTAGCTTTGACATTCTCGATAGTGTCACTGGGCTCGATCTCAAGTGTGATGGTC 10299
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||||| || || || || ||||| || |||||
Sbjct 10298 TTGCCCGTCAAGGTCTTCACAAAGATCTGCAT 10267
>seq48881
Length=14873
Score = 113 bits (124), Expect = 4e-20
Identities = 155/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| |||| |||| || ||||| || || ||||| ||||| | || || || | ||
Sbjct 7402 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 7461
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| ||| | || || ||||||||||| ||| | ||| ||||| ||
Sbjct 7462 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 7521
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| ||||| | | | || || | ||||||| |||| ||| ||||||
Sbjct 7522 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 7581
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180
||||| || | || || || || |||||||||||||
Sbjct 7582 TTGCCCGTCAGGGTCTTCACGAAAATTTGCATTTTGA 7618
>seq2401
Length=18371
Score = 96.9 bits (106), Expect = 3e-15
Identities = 154/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 20955 CGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTT 21014
||||| | ||||||| |||| ||||||| | || || || |||||||| | || ||
Sbjct 365 CGCAGACGAAGCACCAAGTGCAGAGTGGACGCTTTCTGGATATTATAGTCTGAGAGAGTG 306
Query 21015 TGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCT 21074
|| | ||||||||||||||||| ||| |||| || | ||||||||| || | ||
Sbjct 305 CGGCCATCCTCCAGCTGTTTGCCTGCAAAAATCAGACGCTGCTGGTCAGGTGGGATACCC 246
Query 21075 TCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACG 21134
||||||| || || ||| || | | | ||| ||| |||| | || | |
Sbjct 245 TCCTTGTTTTGGAGTTTAGCTTTGACATTCTCAATAGTGTCATTGGGCCCGACCTCAAGG 186
Query 21135 GTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| ||||||||||| |||| || || ||| | || |||||
Sbjct 185 GTGATGGTCTTGCCTGTTAGGGTCTTCACACAGATCTGCAT 145
>seq113583
Length=22641
Score = 89.7 bits (98), Expect = 4e-13
Identities = 155/222 (70%), Gaps = 4/222 (2%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| |||| |||||||| || || || |||||||| | || | | | | |||
Sbjct 17439 AGCACCAAGTGCACGGTGGACTCTTTCTGGATATTATAGTCTGAGAGTGCT--GCCATCC 17496
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||||||||||||| |||| || | |||||| || || | ||| |||| |||
Sbjct 17497 TCCAGCTGTTTGCCCGCACAAATCAGACGCTGCTGCTCAGGCGGGATGCCCTCCTGGTCT 17556
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
||| | ||| || || | ||| |||| |||||| || | || ||||||
Sbjct 17557 TGGATTTGAGCTTTGACATGCTCAGTAGTGTCACTGGGCTCGACCTCGAGTGTGATGGTC 17616
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT-TTTGAATCT 21184
||||| || | || || || || || ||||| | || ||||
Sbjct 17617 TTGCCCGTCAGGGTCTTCAC-AAGATCTGCATCTCTGCATCT 17657
>seq32806
Length=18495
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| |||| |||| |||| || || || || ||||| | || || || | ||
Sbjct 13613 AGCACCAAGTGCAGAGTGAACTCTTTCTGGATATTTTAGTCTGAGAGAGTGCGGCCATCG 13554
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
||||||||||||| ||| || | | | ||||||||| || | ||| ||||| ||
Sbjct 13553 TCCAGCTGTTTGCTGGCAAAAGTCCGACGCTGCTGGTCAGGTGGGATGCCCTCCTTATCT 13494
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
| | || ||| || | | | |||||||| ||||||| || | || ||||||
Sbjct 13493 TGGGTTTTAGCTTTGACATTCTCAATAGTATCACTGGGCTCCACCTCGAGTGTGATGGTC 13434
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||||| || | || || ||||| || |||||
Sbjct 13433 TTGCCTGTCAGGGTCTTCACAAAGATGTGCAT 13402
>seq123873
Length=8769
Score = 84.2 bits (92), Expect = 2e-11
Identities = 78/98 (80%), Gaps = 1/98 (1%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| |||| |||||||| || || || |||||||| | || || ||| | |||
Sbjct 315 AGCACCAAGTGCAG-GTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGTGGCCATCC 257
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061
|||||||||||||| ||| |||| || | |||||||||
Sbjct 256 TCCAGCTGTTTGCCTGCAAAAATCAGACGCTGCTGGTC 219
>seq89363
Length=18264
Score = 82.4 bits (90), Expect = 6e-11
Identities = 90/119 (76%), Gaps = 2/119 (2%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| |||| ||||||||| || || || ||||| || || || || | |||
Sbjct 15789 AGCACCAAGTGCAGAGTGGACTCTTTCTGGATATTATAATCTAAGAGAGT--GGCCATCC 15846
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082
||||||||||||||| || ||| |||| ||||||||| || | ||| ||||||||
Sbjct 15847 TCCAGCTGTTTGCCCTCAAAAAGCAGTCGCTGCTGGTCAGATGGGATGCCCTCCTTGTC 15905
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421433221418000
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