Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq104951 116 3e-21 seq113583 107 2e-18 seq74389 100 2e-16 seq48881 98.7 9e-16 seq2401 95.1 1e-14 seq33159 91.5 1e-13 seq5492 91.5 1e-13 seq89363 87.8 2e-12 seq157135 86.0 5e-12 seq93939 82.4 7e-11 seq32806 82.4 7e-11 >seq104951 Length=12537 Score = 116 bits (128), Expect = 3e-21 Identities = 153/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || |||||||| | ||||| || || | |||||| |||||| Sbjct 11033 CACCAAGTGCAGAGTGGACTCTTTCTCGATGTTATAGTCTGAGAGAGTGCGGCCATCCTC 11092 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || | | || ||||||||||| || || || ||||||||||||||| Sbjct 11093 CAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 11152 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC-TCGACGGTCACCGTTT 118707 ||||| ||| || | ||| | ||||| || ||||||| | || || | || | Sbjct 11153 GATTTTGGCTTTGACGTTTTCAATAGTGTCACTGGGCTCGACCTTTGAGTGTGATGGTCT 11212 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| ||||| ||||| |||| |||||||| Sbjct 11213 TGCCTGTCAGGGTTTTCCCAAAGATCTGCAT 11243 >seq113583 Length=22641 Score = 107 bits (118), Expect = 2e-18 Identities = 151/210 (72%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || |||||||| || || || || || | | ||||| |||||| Sbjct 17441 CACCAAGTGCACGGTGGACTCTTTCTGGATATTATAGTC--TGAGAGTGCTGCCATCCTC 17498 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || | || ||||||||||| || || || |||||||||| |||| Sbjct 17499 CAGCTGTTTGCCCGCACAAATCAGACGCTGCTGCTCAGGCGGGATGCCCTCCTGGTCTTG 17558 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||| ||| || || || ||||| || ||||||||||| || | || || Sbjct 17559 GATTTGAGCTTTGACATGCTCAGTAGTGTCACTGGGCTCGACCTCGAGTGTGATGGTCTT 17618 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || || || |||||||| Sbjct 17619 GCCCGTCAGGGTCTTCAC-AAGATCTGCAT 17647 >seq74389 Length=16610 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || |||||||| || || || || || | |||||| |||||| Sbjct 10476 CACCAAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTC 10417 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | |||||| || || | || ||| ||| ||| || || || ||||||||||||| | Sbjct 10416 CATCTGTTTGCCGGCAAAAATCAGATGCTCCTGGTCAGGTGGGATGCCCTCCTTGTGTTG 10357 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | |||| ||||| || ||||| ||| | || | || || Sbjct 10356 GATTTTAGCTTTGACATTCTCGATAGTGTCACTGGGCTCGATCTCAAGTGTGATGGTCTT 10297 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || || ||||| |||||||| Sbjct 10296 GCCCGTCAAGGTCTTCACAAAGATCTGCAT 10267 >seq48881 Length=14873 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || |||||||| || | |||||| ||| || Sbjct 7405 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 7464 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||||||||| || Sbjct 7465 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 7524 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| || ||| ||||| | ||| | || ||| Sbjct 7525 ATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 7584 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || ||||| ||||| Sbjct 7585 CCCGTCAGGGTCTTCACGAAAATTTGCAT 7613 >seq2401 Length=18371 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||| |||| || || || || || | |||||| |||||| Sbjct 354 CACCAAGTGCAGAGTGGACGCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTC 295 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || | || ||||||||||| || || || || |||||||||| | Sbjct 294 CAGCTGTTTGCCTGCAAAAATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTTTTG 235 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 | ||| ||| || | || | ||||| || | ||||||| | ||| | || || Sbjct 234 GAGTTTAGCTTTGACATTCTCAATAGTGTCATTGGGCCCGACCTCAAGGGTGATGGTCTT 175 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || || ||| | |||||||| Sbjct 174 GCCTGTTAGGGTCTTCACACAGATCTGCAT 145 >seq33159 Length=15523 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | || ||||| |||||||||||||| || Sbjct 2091 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 2150 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||||| ||| || || || || ||||| |||| || | | | |||| ||||| Sbjct 2151 CACAGTGCATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTACAGATCAGGAGG 2210 Query 118631 TATGCCCTCCTTGT-CTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 || | ||||| | |||| || || || || | ||| | || || | | || | Sbjct 2211 AATTTCTTCCTTATCCTGT-ATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAA 2269 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| ||| | || || || || || ||||| |||||||||||||| Sbjct 2270 CCTCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACAAAAATCTGCAT 2318 >seq5492 Length=9153 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | || ||||| |||||||||||||| || Sbjct 3829 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 3770 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||||| | ||| || | || || ||||| |||| || | |||||||| ||||| Sbjct 3769 CAAAGTGCACCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 3710 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| || ||| | || || Sbjct 3709 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGTTCAAC 3650 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||| | || || || || || ||||| || ||||||||||| Sbjct 3649 CTCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCAT 3602 >seq89363 Length=18264 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/208 (70%), Gaps = 5/208 (2%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || |||||||| || || || ||||| | |||| | |||||| Sbjct 15791 CACCAAGTGCAGAGTGGACTCTTTCTGGATATTATAATCTAAGAGAGTGGCC--ATCCTC 15848 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || | | | || |||||||| || | || ||||||||||||||| Sbjct 15849 CAGCTGTTTGCCCTCAAAAAGCAGTCGCTGCTGGTCAGATGGGATGCCCTCCTTGTCTTG 15908 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| || || | || |||||| || ||||||||||| || | || || Sbjct 15909 GATTTTAGCGTTGACGTTCTCAGTGGTGTCACTGGGCTCGACCTCGA--GT-ATGGTCTT 15965 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGC 118736 ||| |||| || || ||||| |||||| Sbjct 15966 GCCCATCAGGGTCTTCACAAAGATCTGC 15993 >seq157135 Length=7578 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||||| | || | || | || | ||||| ||| || Sbjct 2901 CACCAAGTGCACAGTGGACTCTTCTGGA---TATTAGTGTCTGAAAGTGCTGCCATCTTC 2957 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || | || ||||||||||| || || || |||||||||| |||| Sbjct 2958 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGCTCAGGCGGGATGCCCTCCTAGTCTTG 3017 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||| | ||| | | ||| ||||| || ||||||||||| || | | || Sbjct 3018 GATTTGATCTTTGATATTCTCGGTAGTGTCACTGGGCTCGACCTCGAGTGTGATGTTCTT 3077 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||||| || || || || |||||||| Sbjct 3078 GCTGGTCAGGGTCTTCAC-AAGATCTGCAT 3106 >seq93939 Length=21031 Score = 82.4 bits (90), Expect = 7e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 118574 AGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTAT 118633 |||||| |||||| |||||||| || || | | ||| |||||| || || || || Sbjct 20713 AGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAAACCAGATGCTGCTAGTCAGGTGGGAT 20654 Query 118634 GCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTC 118693 ||||||||||||| ||| ||| || | || | |||||| || ||||||||| Sbjct 20653 GCCCTCCTTGTCTTGGATTAGAGCTTTGACATTCTCCATGGTGTCACTGGGCTCGACCTC 20594 Query 118694 GACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || ||||| ||||| || || |||| |||||||| Sbjct 20593 CAGGGGGATGGTCTTGCCCGTCAGGGTCTTCCCAAAGATCTGCAT 20549 >seq32806 Length=18495 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||||| || || || || || | |||||| ||| || Sbjct 13611 CACCAAGTGCAGAGTGAACTCTTTCTGGATATTTTAGTCTGAGAGAGTGCGGCCATCGTC 13552 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| | || | | |||||||||| || || || ||||||||||| ||| Sbjct 13551 CAGCTGTTTGCTGGCAAAAGTCCGACGCTGCTGGTCAGGTGGGATGCCCTCCTTATCTTG 13492 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||| ||| || | || | || || || ||| ||||||| || | || || Sbjct 13491 GGTTTTAGCTTTGACATTCTCAATAGTATCACTGGGCTCCACCTCGAGTGTGATGGTCTT 13432 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || ||||| || ||||| Sbjct 13431 GCCTGTCAGGGTCTTCACAAAGATGTGCAT 13402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432981787066000