Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq104951 116 3e-21
seq113583 107 2e-18
seq74389 100 2e-16
seq48881 98.7 9e-16
seq2401 95.1 1e-14
seq33159 91.5 1e-13
seq5492 91.5 1e-13
seq89363 87.8 2e-12
seq157135 86.0 5e-12
seq93939 82.4 7e-11
seq32806 82.4 7e-11
>seq104951
Length=12537
Score = 116 bits (128), Expect = 3e-21
Identities = 153/211 (73%), Gaps = 1/211 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || |||||||| | ||||| || || | |||||| ||||||
Sbjct 11033 CACCAAGTGCAGAGTGGACTCTTTCTCGATGTTATAGTCTGAGAGAGTGCGGCCATCCTC 11092
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||||| || | | || ||||||||||| || || || |||||||||||||||
Sbjct 11093 CAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 11152
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC-TCGACGGTCACCGTTT 118707
||||| ||| || | ||| | ||||| || ||||||| | || || | || |
Sbjct 11153 GATTTTGGCTTTGACGTTTTCAATAGTGTCACTGGGCTCGACCTTTGAGTGTGATGGTCT 11212
Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||| ||||| ||||| |||| ||||||||
Sbjct 11213 TGCCTGTCAGGGTTTTCCCAAAGATCTGCAT 11243
>seq113583
Length=22641
Score = 107 bits (118), Expect = 2e-18
Identities = 151/210 (72%), Gaps = 3/210 (1%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || |||||||| || || || || || | | ||||| ||||||
Sbjct 17441 CACCAAGTGCACGGTGGACTCTTTCTGGATATTATAGTC--TGAGAGTGCTGCCATCCTC 17498
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||||| || || | || ||||||||||| || || || |||||||||| ||||
Sbjct 17499 CAGCTGTTTGCCCGCACAAATCAGACGCTGCTGCTCAGGCGGGATGCCCTCCTGGTCTTG 17558
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|||| ||| || || || ||||| || ||||||||||| || | || ||
Sbjct 17559 GATTTGAGCTTTGACATGCTCAGTAGTGTCACTGGGCTCGACCTCGAGTGTGATGGTCTT 17618
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| ||||| || || || || ||||||||
Sbjct 17619 GCCCGTCAGGGTCTTCAC-AAGATCTGCAT 17647
>seq74389
Length=16610
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || |||||||| || || || || || | |||||| ||||||
Sbjct 10476 CACCAAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTC 10417
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
| |||||| || || | || ||| ||| ||| || || || ||||||||||||| |
Sbjct 10416 CATCTGTTTGCCGGCAAAAATCAGATGCTCCTGGTCAGGTGGGATGCCCTCCTTGTGTTG 10357
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
||||| ||| || | |||| ||||| || ||||| ||| | || | || ||
Sbjct 10356 GATTTTAGCTTTGACATTCTCGATAGTGTCACTGGGCTCGATCTCAAGTGTGATGGTCTT 10297
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| |||| || || ||||| ||||||||
Sbjct 10296 GCCCGTCAAGGTCTTCACAAAGATCTGCAT 10267
>seq48881
Length=14873
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||| | || |||||||| || |||||||| || | |||||| ||| ||
Sbjct 7405 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 7464
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || || || ||||||| | |||||| || || || ||||||||||| ||
Sbjct 7465 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 7524
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | || | |||||| || ||| ||||| | ||| | || |||
Sbjct 7525 ATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 7584
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| ||||| || || || ||||| |||||
Sbjct 7585 CCCGTCAGGGTCTTCACGAAAATTTGCAT 7613
>seq2401
Length=18371
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || ||| |||| || || || || || | |||||| ||||||
Sbjct 354 CACCAAGTGCAGAGTGGACGCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTC 295
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||||| || || | || ||||||||||| || || || || |||||||||| |
Sbjct 294 CAGCTGTTTGCCTGCAAAAATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTTTTG 235
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
| ||| ||| || | || | ||||| || | ||||||| | ||| | || ||
Sbjct 234 GAGTTTAGCTTTGACATTCTCAATAGTGTCATTGGGCCCGACCTCAAGGGTGATGGTCTT 175
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| || || || || ||| | ||||||||
Sbjct 174 GCCTGTTAGGGTCTTCACACAGATCTGCAT 145
>seq33159
Length=15523
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| || || | ||||||||| | || | || ||||| |||||||||||||| ||
Sbjct 2091 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 2150
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
|| ||||| ||| || || || || ||||| |||| || | | | |||| |||||
Sbjct 2151 CACAGTGCATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTACAGATCAGGAGG 2210
Query 118631 TATGCCCTCCTTGT-CTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
|| | ||||| | |||| || || || || | ||| | || || | | || |
Sbjct 2211 AATTTCTTCCTTATCCTGT-ATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAA 2269
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||||| ||| | || || || || || ||||| ||||||||||||||
Sbjct 2270 CCTCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACAAAAATCTGCAT 2318
>seq5492
Length=9153
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| || || | ||||||||| | || | || ||||| |||||||||||||| ||
Sbjct 3829 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 3770
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
|| ||||| | ||| || | || || ||||| |||| || | |||||||| |||||
Sbjct 3769 CAAAGTGCACCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 3710
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
|| || ||||| || || || || || | ||| || ||| | || ||
Sbjct 3709 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGTTCAAC 3650
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| ||| | || || || || || ||||| || |||||||||||
Sbjct 3649 CTCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCAT 3602
>seq89363
Length=18264
Score = 87.8 bits (96), Expect = 2e-12
Identities = 146/208 (70%), Gaps = 5/208 (2%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || |||||||| || || || ||||| | |||| | ||||||
Sbjct 15791 CACCAAGTGCAGAGTGGACTCTTTCTGGATATTATAATCTAAGAGAGTGGCC--ATCCTC 15848
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||||| || | | | || |||||||| || | || |||||||||||||||
Sbjct 15849 CAGCTGTTTGCCCTCAAAAAGCAGTCGCTGCTGGTCAGATGGGATGCCCTCCTTGTCTTG 15908
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
||||| || || | || |||||| || ||||||||||| || | || ||
Sbjct 15909 GATTTTAGCGTTGACGTTCTCAGTGGTGTCACTGGGCTCGACCTCGA--GT-ATGGTCTT 15965
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGC 118736
||| |||| || || ||||| ||||||
Sbjct 15966 GCCCATCAGGGTCTTCACAAAGATCTGC 15993
>seq157135
Length=7578
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/210 (70%), Gaps = 4/210 (2%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || ||||||| | || | || | || | ||||| ||| ||
Sbjct 2901 CACCAAGTGCACAGTGGACTCTTCTGGA---TATTAGTGTCTGAAAGTGCTGCCATCTTC 2957
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||||| || || | || ||||||||||| || || || |||||||||| ||||
Sbjct 2958 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGCTCAGGCGGGATGCCCTCCTAGTCTTG 3017
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|||| | ||| | | ||| ||||| || ||||||||||| || | | ||
Sbjct 3018 GATTTGATCTTTGATATTCTCGGTAGTGTCACTGGGCTCGACCTCGAGTGTGATGTTCTT 3077
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| |||||| || || || || ||||||||
Sbjct 3078 GCTGGTCAGGGTCTTCAC-AAGATCTGCAT 3106
>seq93939
Length=21031
Score = 82.4 bits (90), Expect = 7e-11
Identities = 117/165 (71%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 118574 AGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTAT 118633
|||||| |||||| |||||||| || || | | ||| |||||| || || || ||
Sbjct 20713 AGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAAACCAGATGCTGCTAGTCAGGTGGGAT 20654
Query 118634 GCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTC 118693
||||||||||||| ||| ||| || | || | |||||| || |||||||||
Sbjct 20653 GCCCTCCTTGTCTTGGATTAGAGCTTTGACATTCTCCATGGTGTCACTGGGCTCGACCTC 20594
Query 118694 GACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
| || | || ||||| ||||| || || |||| ||||||||
Sbjct 20593 CAGGGGGATGGTCTTGCCCGTCAGGGTCTTCCCAAAGATCTGCAT 20549
>seq32806
Length=18495
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || ||||||| || || || || || | |||||| ||| ||
Sbjct 13611 CACCAAGTGCAGAGTGAACTCTTTCTGGATATTTTAGTCTGAGAGAGTGCGGCCATCGTC 13552
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||||| | || | | |||||||||| || || || ||||||||||| |||
Sbjct 13551 CAGCTGTTTGCTGGCAAAAGTCCGACGCTGCTGGTCAGGTGGGATGCCCTCCTTATCTTG 13492
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|||| ||| || | || | || || || ||| ||||||| || | || ||
Sbjct 13491 GGTTTTAGCTTTGACATTCTCAATAGTATCACTGGGCTCCACCTCGAGTGTGATGGTCTT 13432
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| ||||| || || ||||| || |||||
Sbjct 13431 GCCTGTCAGGGTCTTCACAAAGATGTGCAT 13402
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 432981787066000
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