Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq33756 102 2e-16 >seq33756 Length=38327 Score = 102 bits (112), Expect = 2e-16 Identities = 109/139 (78%), Gaps = 5/139 (4%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||| | |||||||| |||||||| ||||||||| | || || || Sbjct 26474 GCATTTTTTGGAGCCCAGATGAATTCTTTCATCCATGTGATTATGTACTCATACTACGGG 26533 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 || | || | |||||| ||| ||||| |||||||| ||||||||||| || | || | Sbjct 26534 TTGACTGCATTTGGTCC-ATGGATTCAG-AAGTATCTTTGGTGGAAACGATACTTGACCA 26591 Query 52175 TAATGCAGTTGGTACAGTT 52193 | ||||| | ||| |||| Sbjct 26592 TGTTGCAGCTAGTA-AGTT 26609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921344636420000