Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq48881 114 1e-20 seq65056 100 3e-16 seq64078 100 3e-16 seq97442 98.7 1e-15 seq90416 98.7 1e-15 seq63810 96.9 4e-15 seq12135 95.1 1e-14 seq32806 91.5 2e-13 seq17409 89.7 6e-13 seq18747 87.8 2e-12 seq2401 84.2 2e-11 >seq48881 Length=14873 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||||| |||| |||| || ||| || || || ||||| |||| Sbjct 7387 CCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 7446 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| || || || ||||| | ||||||||| | || Sbjct 7447 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 7506 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || |||||| ||| ||| || || | || | | |||||||| | ||||| Sbjct 7507 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 7566 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189 || | |||||||| |||||||| || ||||| || || ||||||||||| || Sbjct 7567 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAAATTTGCATTTTGAC 7619 >seq65056 Length=14552 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 4304 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 4245 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 4244 ATACTAACGAGGA 4232 >seq64078 Length=34826 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 26260 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 26201 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 26200 TACTAACGAGGAT 26188 >seq97442 Length=63513 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 30226 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 30167 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 30166 TACTAACGAGGA 30155 >seq90416 Length=8837 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2300 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2359 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2360 TACTAACGAGGA 2371 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 5790 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 5849 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 5850 TACTAACGAGGA 5861 >seq63810 Length=35167 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||| | |||| |||| ||| |||||| || || ||||| || | | Sbjct 27915 CCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27974 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || ||||| || || || || || | ||||||||||| | || Sbjct 27975 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGG 28034 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||| ||||| ||| || |||| || | | ||||| || | ||||| Sbjct 28035 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 28094 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | |||||||| || || || | ||||| |||||||| |||||| Sbjct 28095 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCATT 28142 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||| | |||| |||| ||| |||||| || || ||||| || | | Sbjct 27459 CCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27518 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || ||||| || || || || || | ||||||||||| | || Sbjct 27519 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGG 27578 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||| ||||| ||| || |||| || | | ||||| || | ||||| Sbjct 27579 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 27638 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| || || || | ||||| || ||||| ||||| Sbjct 27639 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27685 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||| | |||| |||| ||| ||| || || || ||||| || | | Sbjct 27687 CCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 27746 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || ||||| || || || || || | ||||||||||| | || Sbjct 27747 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGG 27806 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||| ||||| ||| || |||| || | | ||||| || | ||||| Sbjct 27807 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 27866 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| || || || | ||||| || ||||| ||||| Sbjct 27867 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27913 >seq12135 Length=8511 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||| ||| Sbjct 565 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCCCTA 624 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 625 TACTAACGAGGA 636 >seq32806 Length=18495 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| |||| ||| ||| || || ||||| || || | ||||| || | || || Sbjct 13611 CACCAAGTGCAGAGTGAACTCTTTCTGGATATTTTAGTCTGAGAGAGTGCGGCCATCGTC 13552 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||| || | || || | | ||||||||||| | || | || |||||| || Sbjct 13551 CAGCTGTTTGCTGGCAAAAGTCCGACGCTGCTGGTCAGGTGGGATGCCCTCCTTATCTTG 13492 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | |||| ||||| || | | || || || | ||||| |||| |||||||| || Sbjct 13491 GGTTTTAGCTTTGACATTCTCAATAGTATCACTGGGCTCCACCTCGAGTGTGATGGTCTT 13432 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || ||||| |||||||| ||||| Sbjct 13431 GCCTGTCAGGGTCTTCACAAAGATGTGCAT 13402 >seq17409 Length=15436 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3932 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 3873 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 3872 TACTAACGAGGA 3861 >seq18747 Length=37247 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||| || || || || || || ||||||||||||| ||| | || ||||||||| Sbjct 35527 TAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 35586 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 |||||| ||||| | |||| ||||| | | | || |||| |||||||| || Sbjct 35587 GATTTTAGCTTTGA-CTTCGCAGTAGTGTCACGGGGCTTGACCTCGAGTGTGATGGTCTT 35645 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || ||||| || ||||| ||||| Sbjct 35646 GCCCGTCAGGGTCTTCAC-AAGATCTGCAT 35674 >seq2401 Length=18371 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| |||| ||| | | || || ||||| || || | ||||| || | Sbjct 360 ACGAAGCACCAAGTGCAGAGTGGACGCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCC 301 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || ||||| || || || || || || ||||||||||| | || | | |||||| Sbjct 300 ATCCTCCAGCTGTTTGCCTGCAAAAATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTT 241 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 || || ||| ||||| || | | ||||| | | | || || | ||||| Sbjct 240 GTTTTGGAGTTTAGCTTTGACATTCTCAATAGTGTCATTGGGCCCGACCTCAAGGGTGAT 181 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| ||||| ||||| ||| |||| ||||| Sbjct 180 GGTCTTGCCTGTTAGGGTCTTCACACAGATCTGCAT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570670390940000