Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq88024 95.1 2e-14 seq5492 89.7 8e-13 seq157463 86.0 9e-12 >seq88024 Length=2735 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| || ||||||| |||| ||||||| | |||| || ||| ||| | || | Sbjct 2073 TTCCTTCTGGGTGTTATGGAAGAGTAGCTCCACGTTCTGGATTGGCTACAAAACACTTCA 2014 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 | ||| | |||||||| || || ||||||||||| ||||||||| |||| || || | | Sbjct 2013 TAGATGTAGGAGCTGGTGTCATAGACGAAGATTACAGAGGAAATATGGGTGTTGTACTGT 1954 Query 10549 TTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATAT 10608 ||||| | || ||| | ||| | | || | || ||| |||| | || | || | Sbjct 1953 TTAATTTTGGCAAAGAAAAGTTTGAAGTCAAAAAGGGTGATCGAATTGCACAGCTCATTT 1894 Query 10609 GTGAAAAAATTTTATATCCTAAAAT 10633 ||||| ||||| || ||| |||| Sbjct 1893 GTGAACGGATTTTTTACCCTGAAAT 1869 >seq5492 Length=9153 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | ||| || || ||| || || || || || || Sbjct 3828 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 3770 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || ||| || |||||||| |||| |||||||||||| ||||| Sbjct 3769 CAAAGTGCACCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 3710 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 3709 AATTCCTTCCTTATCCTG 3692 >seq157463 Length=7943 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| || || | ||| | ||| || ||||| || || || ||||| Sbjct 334 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCTGAC 393 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || | || || |||||||| ||| |||||||||| | |||||| Sbjct 394 AAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCGGTCTTTGCTGAGCAGGAGGA 453 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 454 ATTCCTTCCTTATCCTG 470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742034700160000