Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq88024 95.1 2e-14
seq5492 89.7 8e-13
seq157463 86.0 9e-12
>seq88024
Length=2735
Score = 95.1 bits (104), Expect = 2e-14
Identities = 144/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488
||||| || ||||||| |||| ||||||| | |||| || ||| ||| | || |
Sbjct 2073 TTCCTTCTGGGTGTTATGGAAGAGTAGCTCCACGTTCTGGATTGGCTACAAAACACTTCA 2014
Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548
| ||| | |||||||| || || ||||||||||| ||||||||| |||| || || | |
Sbjct 2013 TAGATGTAGGAGCTGGTGTCATAGACGAAGATTACAGAGGAAATATGGGTGTTGTACTGT 1954
Query 10549 TTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATAT 10608
||||| | || ||| | ||| | | || | || ||| |||| | || | || |
Sbjct 1953 TTAATTTTGGCAAAGAAAAGTTTGAAGTCAAAAAGGGTGATCGAATTGCACAGCTCATTT 1894
Query 10609 GTGAAAAAATTTTATATCCTAAAAT 10633
||||| ||||| || ||| ||||
Sbjct 1893 GTGAACGGATTTTTTACCCTGAAAT 1869
>seq5492
Length=9153
Score = 89.7 bits (98), Expect = 8e-13
Identities = 104/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||||| || || | ||| | ||| || || ||| || || || || || ||
Sbjct 3828 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 3770
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||| | | ||| || ||| || |||||||| |||| |||||||||||| |||||
Sbjct 3769 CAAAGTGCACCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 3710
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 3709 AATTCCTTCCTTATCCTG 3692
>seq157463
Length=7943
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | |||||| || || | ||| | ||| || ||||| || || || |||||
Sbjct 334 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCTGAC 393
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| ||| | | ||| || | || || |||||||| ||| |||||||||| | ||||||
Sbjct 394 AAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCGGTCTTTGCTGAGCAGGAGGA 453
Query 146171 ATTCCTTCTTTATCTTG 146187
|||||||| ||||| ||
Sbjct 454 ATTCCTTCCTTATCCTG 470
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 742034700160000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |