Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq82175 107 2e-18 seq85480 104 2e-17 seq14641 87.8 2e-12 >seq82175 Length=13617 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | |||||||||||| | | | || ||| |||| | Sbjct 979 TTTAAAAATCTGCATCCAAGGTGAACACATTATCTGTGGTTTCTGCCATTACTGCAAAAC 920 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || ||||||||||||||||| |||||||| ||||| |||| Sbjct 919 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 860 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 859 CCATAAAATCAAAGGGATTTTCTG 836 >seq85480 Length=19824 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | ||||| ||||| || || || ||||| ||||||||||| || Sbjct 17791 TCATCTCTGCTAATAAGTTCGTTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 17732 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| ||||||||||| || Sbjct 17731 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAGCT 17672 Query 16379 AC 16380 || Sbjct 17671 AC 17670 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||| || ||| ||| | | ||| ||| ||| || | ||||||| ||| |||| Sbjct 19245 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATTC 19186 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | || || || | ||||||||||||||||| || || || ||||| | ||||||||| | Sbjct 19185 TCTGGTACTCGCCTACTCTCTTTTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCT 19126 Query 16005 CCATAAAATCAAAAGGATTTT 16025 |||| || ||||| || |||| Sbjct 19125 CCATGAAGTCAAACGGGTTTT 19105 >seq14641 Length=5504 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106 |||| | |||| | |||||| || || |||||||| |||||||||||||| ||| ||| Sbjct 2668 ATCCAAGTTCCGCAAGTAATCTGTCAGCTACAAATTCAATATACTGTTTCATCAAAACAC 2609 Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 | |||||||| || | | ||| || | |||||||||||||| Sbjct 2608 AATTCATTCCAATAAGTCCAACTGGCAAGGCTTCTGTTAAAAA 2566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461584085300000