Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq82175 107 2e-18
seq85480 104 2e-17
seq14641 87.8 2e-12
>seq82175
Length=13617
Score = 107 bits (118), Expect = 2e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|||||||||| ||| | | |||||||||||| | | | || ||| |||| |
Sbjct 979 TTTAAAAATCTGCATCCAAGGTGAACACATTATCTGTGGTTTCTGCCATTACTGCAAAAC 920
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
||||| || ||||| || ||||||||||||||||| |||||||| ||||| ||||
Sbjct 919 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 860
Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028
||||||||||||| ||||||| ||
Sbjct 859 CCATAAAATCAAAGGGATTTTCTG 836
>seq85480
Length=19824
Score = 104 bits (114), Expect = 2e-17
Identities = 96/122 (79%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || || || || | ||||| ||||| || || || ||||| ||||||||||| ||
Sbjct 17791 TCATCTCTGCTAATAAGTTCGTTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 17732
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| ||| ||||| | ||||| |||||||||||||| || ||||| ||||||||||| ||
Sbjct 17731 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAGCT 17672
Query 16379 AC 16380
||
Sbjct 17671 AC 17670
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|||| || ||| ||| | | ||| ||| ||| || | ||||||| ||| ||||
Sbjct 19245 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATTC 19186
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
| || || || | ||||||||||||||||| || || || ||||| | ||||||||| |
Sbjct 19185 TCTGGTACTCGCCTACTCTCTTTTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCT 19126
Query 16005 CCATAAAATCAAAAGGATTTT 16025
|||| || ||||| || ||||
Sbjct 19125 CCATGAAGTCAAACGGGTTTT 19105
>seq14641
Length=5504
Score = 87.8 bits (96), Expect = 2e-12
Identities = 81/103 (79%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106
|||| | |||| | |||||| || || |||||||| |||||||||||||| ||| |||
Sbjct 2668 ATCCAAGTTCCGCAAGTAATCTGTCAGCTACAAATTCAATATACTGTTTCATCAAAACAC 2609
Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149
| |||||||| || | | ||| || | ||||||||||||||
Sbjct 2608 AATTCATTCCAATAAGTCCAACTGGCAAGGCTTCTGTTAAAAA 2566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461584085300000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |