Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq126506 1795 0.0 seq69878 118 7e-22 >seq126506 Length=11932 Score = 1795 bits (1990), Expect = 0.0 Identities = 1419/1706 (83%), Gaps = 44/1706 (3%) Strand=Plus/Minus Query 107087 CAGCATGACTAGCTGGTTTGCAGCATCAGGTTACAGATGTCCATCCACAAGGG------- 107139 |||||||| || | ||||||| |||||||| ||| |||| | ||||| Sbjct 8793 CAGCATGATCAGGTAATTTGCAGGGTCAGGTTATAGACCTCCAGCAGCAAGGCAGGTGTA 8734 Query 107140 ------TCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTAC 107193 || || ||||| ||||||| ||||||||||||| |||||| || ||| ||| | Sbjct 8733 AGAGGTTCCTAAGCAGGTGTTGACTGTGGATATTTGTCTAGAGAAGAAATATATTTTTGC 8674 Query 107194 CATCACTCTGGAGTTGAACTTGATGTTCT--GGA------TTAG-------TTTGTAATT 107238 ||||||| |||||||||||||||||||| ||| |||| ||||||||| Sbjct 8673 CATCACTTTGGAGTTGAACTTGATGTTCCTGGGAACACGTTTAGGGTAAAGTTTGTAATT 8614 Query 107239 AAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCTGTGCCCAAACTCTCC 107298 |||| ||||||||||||||||||||| | |||| | ||| | ||||||||| ||| | Sbjct 8613 GAAGGTATTTTGTTCTGTCCAAGGATCCCATCCTTCTTCTTCCTGGTGCCCAAATTCTAC 8554 Query 107299 TGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATC 107358 ||||| |||| ||||||||||| | ||||||||||||| || | || | || | | Sbjct 8553 CGATCTTCCATTCCATGAAGATGATTTGGTGGAAGAAGAAACTCTTCCAGAAGCACTACC 8494 Query 107359 TGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGT 107418 ||||||| |||||||||||| | ||||||||| |||| ||||||||||||| ||||| | Sbjct 8493 TGTGGGCTCTGGGCTGCTATTTCCTGCTGGCCATTGTCGCTCTGAGACTTTCTCTCAGAT 8434 Query 107419 TTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTA 107478 | |||||||| | |||||| ||||||||||||||||| |||| | || ||||||||| Sbjct 8433 TGAAATGTGACTTTGATTCCCTGGATCTGGAGTCCAGGAACTTTCGAAGCAAGCACTGTA 8374 Query 107479 GGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGA 107538 ||||||| |||||||| ||||||| ||||||||| ||||| ||| ||||||||||| | Sbjct 8373 GGGACATCTTGTACAAGTCCCTGAAGTTGCCAGCAAGGAGATTCATGAACTGTTCTGGAA 8314 Query 107539 TCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGA 107598 ||| ||||| ||||||||||||||| |||| ||||| ||||||||||| || |||| Sbjct 8313 TCATCCGAGGAGACCAGGAAGCAGTGACGGAGGCTCTCCTGGACAACCTGGATGTCAAGA 8254 Query 107599 AAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCT 107658 | |||||| |||| |||| | |||| | ||||||||||| |||||||||||||||| || Sbjct 8253 AGAAGCGGAAGCCTTTCACAGACACCGACTACCTCAACATGACCAGAGACTGTGAGCACT 8194 Query 107659 TCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCA 107718 | |||||| |||||||||||||||||| |||||| || |||||||| |||||||||| | Sbjct 8193 TTAAGGCCAAAAGGAAGTTCATACAGTACCCACTCAGCAAAGAAGAAGTAGACTTCCCTA 8134 Query 107719 TTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCG 107778 |||| | ||| |||||||||||||||||||||||||| |||||| |||||||| |||| | Sbjct 8133 TTGCATTCTCTATGGTGGTCCATGAGAAGATTGAAAATTTTGAAAGGCTGCTGAGAGCTG 8074 Query 107779 TGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCA 107838 |||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||| Sbjct 8073 TGTATGCCCCTCAGAACATATATTGTGTCCACGTGGATGAGAAGTCCCCAGAAACTTTCA 8014 Query 107839 AAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGG 107898 ||||||| |||||||| |||||||| |||||||| ||||||||||| ||||||||||||| Sbjct 8013 AAGAGGCAGTCAAGGCAATTATTTCATGCTTCCCAAATGTCTTCATAGCCAGTAAGTTGG 7954 Query 107899 TCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACT 107958 | | |||||||||||||||||||| | ||||| ||||||||||||||||||||||||| Sbjct 7953 TTCGGGTGGTTTATGCCTCCTGGTTTCGGGTGCAGGCTGACCTGAACTGTATGGAAGACT 7894 Query 107959 TGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCA 108018 ||||||||||||||||||||||||| ||||| ||||||||||| || |||||||| || | Sbjct 7893 TGCTCCAGAGCTCAGTGCCATGGAAATACTTCCTGAATACATGTGGAACAGACTTTCCTA 7834 Query 108019 TAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGG 108078 | |||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| Sbjct 7833 TGAAGACCAATGCCGAGATGGTTCTGGCCCTCAAGATGTTGAATGGGAAGAACAGTATGG 7774 Query 108079 AGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAG 108138 |||| ||| ||||| ||||| ||||||| |||||||||||||| ||||||||||||| Sbjct 7773 AGTCAGAGATACCTAGTGAGTACAAAAAATCTCGCTGGAAATACCACTATGAGGTGACAA 7714 Query 108139 ACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCA 108198 ||||| | | || ||||||||||| ||||||||||||||| |||||||||| || |||| Sbjct 7713 ACACAATATCCCAAACCAGCAAGATAAAGGACCCTCCCCCTTATAATTTACCTATCTTCA 7654 Query 108199 CAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTA 108258 | |||||||||||| ||||||| ||||||| |||||||||||| |||||||| ||||| | Sbjct 7653 CGGGGAATGCCTATATTGTGGCTTCTCGAGGCTTTGTCCAACAAGTCTTAGAGAACCCCA 7594 Query 108259 AATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGG 108318 |||| ||| |||| | |||||||| ||||||||||| |||||||| ||||||||||||| Sbjct 7593 AATCACAACAACTGATCGAATGGGTAAAAGACACCTACAGCCCCGATGAACACCTCTGGG 7534 Query 108319 CCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACA 108378 |||||||||||||||| || |||||||||||||||||||| ||||||||||| ||||| Sbjct 7533 CCACCCTTCAGCGTGCACCATGGATGCCTGGCTCTGTTCCCTACCACCCCAAGTTTCACA 7474 Query 108379 TCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCA 108438 ||||||||| ||||||| |||||||| ||||||||||||||||| || ||||| ||| Sbjct 7473 CTTCAGACATGGCTGCCATTGCCAGGCTGGTCAAGTGGCAGTACCATGAAGGAGACATCA 7414 Query 108439 GCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACG 108498 | | |||||| ||||||| ||| |||||||||| ||| | | ||| ||||||||||| | Sbjct 7413 GTAAGGGGGCACCTTATGGACCTTGCTCTGGAACCCACCAGCGGGGTATCTGCATTTATG 7354 Query 108499 GGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACC 108558 |||| ||||||||| |||||||||| | |||| |||||| ||||| ||||||||||||| Sbjct 7353 GGGCTGGGGACCTGCACTGGATTCTTCGTAACCCTCACCTGTTGGCCAACAAGTTTGACC 7294 Query 108559 CGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCT 108618 | | ||||||||||| ||||| |||||||||||||||||| ||||| |||||||||||| Sbjct 7293 CCAAAGTGGATGATAATGTCCTTCAGTGCTTAGAAGAGTACTTACGTTATAAGGCCATCT 7234 Query 108619 ATGGGACTGAACTTTGAG---------------CTGCACTGTGGGCCAGG-GACTGTGCC 108662 ||||||||||||| |||| ||| ||||| |||| | ||||| Sbjct 7233 ATGGGACTGAACTCTGAGATACATTACGAGAGAGTGCCCTGTGCAGCAGGAGCATGTGCA 7174 Query 108663 AACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCATG 108722 ||||||||||| || ||| || ||| |||||||| ||| |||||| ||||||||||| Sbjct 7173 AACATGCCCAGACTGTCCTGCGACAGTGAGGGGTGGGAGACTAGGGCTCTGGAATCCATG 7114 Query 108723 GCATCCCCCAGGGTCAGAGGGCTGCT 108748 |||||| |||||| |||| ||||| Sbjct 7113 GCATCCGCCAGGGCAGGAGGTCTGCT 7088 >seq69878 Length=27291 Score = 118 bits (130), Expect = 7e-22 Identities = 568/886 (64%), Gaps = 29/886 (3%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| | | || || || || || || || ||||| ||| | || Sbjct 5869 CCCCTTAGTAAAGAAGAGGAAAAGTTTCCAATAGCATATTCCATAGTGGTTCATCACAAA 5810 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| || | ||| | || |||||||| | || || | Sbjct 5809 ATTGAAATGCTTGACAGGCTCTTGAGGGCCATCTACATGCCTCAGAATTTCTATTGCATT 5750 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || ||||| || || || | || | ||||| | | |||| ||||| Sbjct 5749 CATGTGGACAAAAAATCAGAGGATTCCTTTTTGGCTGCGGTGATTGGCATTGCATCCTGT 5690 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| || ||||| |||||||| | ||| | || || ||||| || ||| | Sbjct 5689 TTCAGTAACGTCTTTGTGGCCAGTCGGCTGGAGACTGTCGTGTATGCATCGTGGAGTCGG 5630 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || || || || ||||||||| | ||| | || | || | ||||| ||||||| Sbjct 5629 GTTCAGGCGGATCTCAACTGTATGCAGGACCT-CTACCGAA-TGAGTGCAGACTGGAAGT 5572 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| | ||| || || | || || || || || ||||| || || ||| | Sbjct 5571 ACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCAGGA 5512 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAGTCCa 108102 | |||||| ||| || || | |||| | || ||||| | || || | | Sbjct 5511 CGCTCAAGTCGTTAAACGGAGAAAACAACCTAGAAACTGAGAAAATGCCATCCAAT---A 5455 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATGAG---GTGACAGACACACTGTACCCTACCAGCA 108159 ||||| | | |||||| | | ||| || | | | |||| || | | Sbjct 5454 AAAAAGAAAGGTGGAAAAAGCATTATACCATTGTTAATGGAAAACTGACAAACACAGGGA 5395 Query 108160 -AGATGAAGGAC--CCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTG 108216 ||| || || ||||| | ||| | ||| |||| |||| | ||||||||||| Sbjct 5394 CAGACAAATTACAGCCTCCTCTTGAAAC---ACCTCTGTTTTCAGGCAGTGCCTATTTTG 5338 Query 108217 TGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTG 108276 ||| | | | | ||| | |||| |||| || ||| ||||| | | | Sbjct 5337 TGGTCAGTAGGAATTATGTGGAGTATGTGCTAGAGAATGAAAAAATCCAAAAGTTTATGG 5278 Query 108277 AATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTC 108336 | |||| |||||||| || ||||| || || | ||||||||||| ||||| | | || Sbjct 5277 AGTGGGCAAAAGACACATACAGCCCAGATGAGTATCTCTGGGCCACTATTCAGAG-GATC 5219 Query 108337 CGTGGA-TGCCTGGCTC--TGTTCCTA-GCCACCCCAAGTATCACATCTCAGACATGACT 108392 | || | | || ||||| ||| |||| |||| |||||| |||| || |||||| | Sbjct 5218 CCTGAAGTCCCAGGCTCACTGTCCCTAAGCCAT---AAGTATGACATGTCCGACATGCAT 5162 Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCT 108452 || || || ||| | ||||||||||||||| || || ||||| || ||| || || Sbjct 5161 GCAATTGCTAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGATGTTTCCAAGGGCGCCCCC 5102 Query 108453 TATGCACCCTGCTCTGGAATCCATCGGA-GGGCCATCTGCATTTACGGGGCCGGGGACCT 108511 || | |||||| ||| |||| || | | || | || ||| || || || ||| | Sbjct 5101 TACCCGCCCTGCAGTGGTGTCCA-CGTACGCTCCGTGTGTGTTTTTGGAGCAGGTGACTT 5043 Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | ||||||| | | || || ||| | || || || ||||||||| Sbjct 5042 GAACTGGATGTTGCGCAAGCACCACTTGTTTGCTAATAAGTTTGAC 4997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347587553577000