Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq126506 1795 0.0
seq69878 118 7e-22
>seq126506
Length=11932
Score = 1795 bits (1990), Expect = 0.0
Identities = 1419/1706 (83%), Gaps = 44/1706 (3%)
Strand=Plus/Minus
Query 107087 CAGCATGACTAGCTGGTTTGCAGCATCAGGTTACAGATGTCCATCCACAAGGG------- 107139
|||||||| || | ||||||| |||||||| ||| |||| | |||||
Sbjct 8793 CAGCATGATCAGGTAATTTGCAGGGTCAGGTTATAGACCTCCAGCAGCAAGGCAGGTGTA 8734
Query 107140 ------TCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTAC 107193
|| || ||||| ||||||| ||||||||||||| |||||| || ||| ||| |
Sbjct 8733 AGAGGTTCCTAAGCAGGTGTTGACTGTGGATATTTGTCTAGAGAAGAAATATATTTTTGC 8674
Query 107194 CATCACTCTGGAGTTGAACTTGATGTTCT--GGA------TTAG-------TTTGTAATT 107238
||||||| |||||||||||||||||||| ||| |||| |||||||||
Sbjct 8673 CATCACTTTGGAGTTGAACTTGATGTTCCTGGGAACACGTTTAGGGTAAAGTTTGTAATT 8614
Query 107239 AAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCTGTGCCCAAACTCTCC 107298
|||| ||||||||||||||||||||| | |||| | ||| | ||||||||| ||| |
Sbjct 8613 GAAGGTATTTTGTTCTGTCCAAGGATCCCATCCTTCTTCTTCCTGGTGCCCAAATTCTAC 8554
Query 107299 TGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATC 107358
||||| |||| ||||||||||| | ||||||||||||| || | || | || | |
Sbjct 8553 CGATCTTCCATTCCATGAAGATGATTTGGTGGAAGAAGAAACTCTTCCAGAAGCACTACC 8494
Query 107359 TGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGT 107418
||||||| |||||||||||| | ||||||||| |||| ||||||||||||| ||||| |
Sbjct 8493 TGTGGGCTCTGGGCTGCTATTTCCTGCTGGCCATTGTCGCTCTGAGACTTTCTCTCAGAT 8434
Query 107419 TTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTA 107478
| |||||||| | |||||| ||||||||||||||||| |||| | || |||||||||
Sbjct 8433 TGAAATGTGACTTTGATTCCCTGGATCTGGAGTCCAGGAACTTTCGAAGCAAGCACTGTA 8374
Query 107479 GGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGA 107538
||||||| |||||||| ||||||| ||||||||| ||||| ||| ||||||||||| |
Sbjct 8373 GGGACATCTTGTACAAGTCCCTGAAGTTGCCAGCAAGGAGATTCATGAACTGTTCTGGAA 8314
Query 107539 TCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGA 107598
||| ||||| ||||||||||||||| |||| ||||| ||||||||||| || ||||
Sbjct 8313 TCATCCGAGGAGACCAGGAAGCAGTGACGGAGGCTCTCCTGGACAACCTGGATGTCAAGA 8254
Query 107599 AAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCT 107658
| |||||| |||| |||| | |||| | ||||||||||| |||||||||||||||| ||
Sbjct 8253 AGAAGCGGAAGCCTTTCACAGACACCGACTACCTCAACATGACCAGAGACTGTGAGCACT 8194
Query 107659 TCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCA 107718
| |||||| |||||||||||||||||| |||||| || |||||||| |||||||||| |
Sbjct 8193 TTAAGGCCAAAAGGAAGTTCATACAGTACCCACTCAGCAAAGAAGAAGTAGACTTCCCTA 8134
Query 107719 TTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCG 107778
|||| | ||| |||||||||||||||||||||||||| |||||| |||||||| |||| |
Sbjct 8133 TTGCATTCTCTATGGTGGTCCATGAGAAGATTGAAAATTTTGAAAGGCTGCTGAGAGCTG 8074
Query 107779 TGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCA 107838
|||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||
Sbjct 8073 TGTATGCCCCTCAGAACATATATTGTGTCCACGTGGATGAGAAGTCCCCAGAAACTTTCA 8014
Query 107839 AAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGG 107898
||||||| |||||||| |||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 8013 AAGAGGCAGTCAAGGCAATTATTTCATGCTTCCCAAATGTCTTCATAGCCAGTAAGTTGG 7954
Query 107899 TCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACT 107958
| | |||||||||||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 7953 TTCGGGTGGTTTATGCCTCCTGGTTTCGGGTGCAGGCTGACCTGAACTGTATGGAAGACT 7894
Query 107959 TGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCA 108018
||||||||||||||||||||||||| ||||| ||||||||||| || |||||||| || |
Sbjct 7893 TGCTCCAGAGCTCAGTGCCATGGAAATACTTCCTGAATACATGTGGAACAGACTTTCCTA 7834
Query 108019 TAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGG 108078
| |||||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 7833 TGAAGACCAATGCCGAGATGGTTCTGGCCCTCAAGATGTTGAATGGGAAGAACAGTATGG 7774
Query 108079 AGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAG 108138
|||| ||| ||||| ||||| ||||||| |||||||||||||| |||||||||||||
Sbjct 7773 AGTCAGAGATACCTAGTGAGTACAAAAAATCTCGCTGGAAATACCACTATGAGGTGACAA 7714
Query 108139 ACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCA 108198
||||| | | || ||||||||||| ||||||||||||||| |||||||||| || ||||
Sbjct 7713 ACACAATATCCCAAACCAGCAAGATAAAGGACCCTCCCCCTTATAATTTACCTATCTTCA 7654
Query 108199 CAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTA 108258
| |||||||||||| ||||||| ||||||| |||||||||||| |||||||| ||||| |
Sbjct 7653 CGGGGAATGCCTATATTGTGGCTTCTCGAGGCTTTGTCCAACAAGTCTTAGAGAACCCCA 7594
Query 108259 AATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGG 108318
|||| ||| |||| | |||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 7593 AATCACAACAACTGATCGAATGGGTAAAAGACACCTACAGCCCCGATGAACACCTCTGGG 7534
Query 108319 CCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACA 108378
|||||||||||||||| || |||||||||||||||||||| ||||||||||| |||||
Sbjct 7533 CCACCCTTCAGCGTGCACCATGGATGCCTGGCTCTGTTCCCTACCACCCCAAGTTTCACA 7474
Query 108379 TCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCA 108438
||||||||| ||||||| |||||||| ||||||||||||||||| || ||||| |||
Sbjct 7473 CTTCAGACATGGCTGCCATTGCCAGGCTGGTCAAGTGGCAGTACCATGAAGGAGACATCA 7414
Query 108439 GCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACG 108498
| | |||||| ||||||| ||| |||||||||| ||| | | ||| ||||||||||| |
Sbjct 7413 GTAAGGGGGCACCTTATGGACCTTGCTCTGGAACCCACCAGCGGGGTATCTGCATTTATG 7354
Query 108499 GGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACC 108558
|||| ||||||||| |||||||||| | |||| |||||| ||||| |||||||||||||
Sbjct 7353 GGGCTGGGGACCTGCACTGGATTCTTCGTAACCCTCACCTGTTGGCCAACAAGTTTGACC 7294
Query 108559 CGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCT 108618
| | ||||||||||| ||||| |||||||||||||||||| ||||| ||||||||||||
Sbjct 7293 CCAAAGTGGATGATAATGTCCTTCAGTGCTTAGAAGAGTACTTACGTTATAAGGCCATCT 7234
Query 108619 ATGGGACTGAACTTTGAG---------------CTGCACTGTGGGCCAGG-GACTGTGCC 108662
||||||||||||| |||| ||| ||||| |||| | |||||
Sbjct 7233 ATGGGACTGAACTCTGAGATACATTACGAGAGAGTGCCCTGTGCAGCAGGAGCATGTGCA 7174
Query 108663 AACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCATG 108722
||||||||||| || ||| || ||| |||||||| ||| |||||| |||||||||||
Sbjct 7173 AACATGCCCAGACTGTCCTGCGACAGTGAGGGGTGGGAGACTAGGGCTCTGGAATCCATG 7114
Query 108723 GCATCCCCCAGGGTCAGAGGGCTGCT 108748
|||||| |||||| |||| |||||
Sbjct 7113 GCATCCGCCAGGGCAGGAGGTCTGCT 7088
>seq69878
Length=27291
Score = 118 bits (130), Expect = 7e-22
Identities = 568/886 (64%), Gaps = 29/886 (3%)
Strand=Plus/Minus
Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747
|| || |||||||||||| | | || || || || || || || ||||| ||| | ||
Sbjct 5869 CCCCTTAGTAAAGAAGAGGAAAAGTTTCCAATAGCATATTCCATAGTGGTTCATCACAAA 5810
Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807
||||||| |||| |||| || | ||| | || |||||||| | || || |
Sbjct 5809 ATTGAAATGCTTGACAGGCTCTTGAGGGCCATCTACATGCCTCAGAATTTCTATTGCATT 5750
Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867
|| ||||| || || || | || | ||||| | | |||| |||||
Sbjct 5749 CATGTGGACAAAAAATCAGAGGATTCCTTTTTGGCTGCGGTGATTGGCATTGCATCCTGT 5690
Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927
||| || ||||| |||||||| | ||| | || || ||||| || ||| |
Sbjct 5689 TTCAGTAACGTCTTTGTGGCCAGTCGGCTGGAGACTGTCGTGTATGCATCGTGGAGTCGG 5630
Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985
|| || || || || ||||||||| | ||| | || | || | ||||| |||||||
Sbjct 5629 GTTCAGGCGGATCTCAACTGTATGCAGGACCT-CTACCGAA-TGAGTGCAGACTGGAAGT 5572
Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045
|||| | ||| || || | || || || || || ||||| || || ||| |
Sbjct 5571 ACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCAGGA 5512
Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAGTCCa 108102
| |||||| ||| || || | |||| | || ||||| | || || | |
Sbjct 5511 CGCTCAAGTCGTTAAACGGAGAAAACAACCTAGAAACTGAGAAAATGCCATCCAAT---A 5455
Query 108103 aaaaaaaTCGCTGGAAATACCGCTATGAG---GTGACAGACACACTGTACCCTACCAGCA 108159
||||| | | |||||| | | ||| || | | | |||| || | |
Sbjct 5454 AAAAAGAAAGGTGGAAAAAGCATTATACCATTGTTAATGGAAAACTGACAAACACAGGGA 5395
Query 108160 -AGATGAAGGAC--CCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTG 108216
||| || || ||||| | ||| | ||| |||| |||| | |||||||||||
Sbjct 5394 CAGACAAATTACAGCCTCCTCTTGAAAC---ACCTCTGTTTTCAGGCAGTGCCTATTTTG 5338
Query 108217 TGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTG 108276
||| | | | | ||| | |||| |||| || ||| ||||| | | |
Sbjct 5337 TGGTCAGTAGGAATTATGTGGAGTATGTGCTAGAGAATGAAAAAATCCAAAAGTTTATGG 5278
Query 108277 AATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTC 108336
| |||| |||||||| || ||||| || || | ||||||||||| ||||| | | ||
Sbjct 5277 AGTGGGCAAAAGACACATACAGCCCAGATGAGTATCTCTGGGCCACTATTCAGAG-GATC 5219
Query 108337 CGTGGA-TGCCTGGCTC--TGTTCCTA-GCCACCCCAAGTATCACATCTCAGACATGACT 108392
| || | | || ||||| ||| |||| |||| |||||| |||| || |||||| |
Sbjct 5218 CCTGAAGTCCCAGGCTCACTGTCCCTAAGCCAT---AAGTATGACATGTCCGACATGCAT 5162
Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCT 108452
|| || || ||| | ||||||||||||||| || || ||||| || ||| || ||
Sbjct 5161 GCAATTGCTAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGATGTTTCCAAGGGCGCCCCC 5102
Query 108453 TATGCACCCTGCTCTGGAATCCATCGGA-GGGCCATCTGCATTTACGGGGCCGGGGACCT 108511
|| | |||||| ||| |||| || | | || | || ||| || || || ||| |
Sbjct 5101 TACCCGCCCTGCAGTGGTGTCCA-CGTACGCTCCGTGTGTGTTTTTGGAGCAGGTGACTT 5043
Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557
| ||||||| | | || || ||| | || || || |||||||||
Sbjct 5042 GAACTGGATGTTGCGCAAGCACCACTTGTTTGCTAATAAGTTTGAC 4997
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347587553577000
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