Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq48881 91.5 1e-13
seq63810 82.4 6e-11
seq33159 82.4 6e-11
seq5492 82.4 6e-11
>seq48881
Length=14873
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || || ||||| || ||||||||||| | | || | ||||
Sbjct 7402 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 7461
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| || ||||| ||| |||| || || || || || ||| | ||| ||||||||
Sbjct 7462 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 7521
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | ||| || | ||| ||||| | |||||| || | ||||||| |
Sbjct 7522 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 7581
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
||||| |||| || || || ||||||||||||||
Sbjct 7582 TTGCCCGTCAGGGTCTTCACGAAAATTTGCATTTT 7616
>seq63810
Length=35167
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || || || || || ||||||||||||| || || | ||||
Sbjct 27930 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCT 27989
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| |||||||| ||| |||| | | || || || ||| | ||| || || ||
Sbjct 27990 TCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCT 28049
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | |||||| | | | ||||||| |||||| || | ||||||| |
Sbjct 28050 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 28109
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|| |||||||| || || ||||| || ||||||
Sbjct 28110 TTACCGGTCAAGGTCTTCACAAAGATCTGCATT 28142
>seq33159
Length=15523
Score = 82.4 bits (90), Expect = 6e-11
Identities = 173/255 (68%), Gaps = 6/255 (2%)
Strand=Plus/Plus
Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135
|| || | ||| |||| ||| | | || || ||||| | || | ||||| || || |
Sbjct 2069 AAGACTTCTTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACT 2128
Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195
| ||||||||||||||||| | || || | |||||||| ||| ||||| ||| |||
Sbjct 2129 CCTTTTGAATGTTGTAGTCAGACACAGTGCATCCATCTTCCAGTTGCTTGCCAGCAAAGA 2188
Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTG--CTTGACCTG 18253
| ||||||| |||| || | |||||||||| | | | ||| ||| || |
Sbjct 2189 TCAGTCTTTACAGATCAGGAGGAATTTCTTCCTTATC--CTGTATCTTGGCCTTTACATT 2246
Query 18254 TGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTAC 18313
| | | || || ||| || || | ||||||| | || || || | ||||| ||
Sbjct 2247 TTCTATTGTATCTGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCAC 2306
Query 18314 AAAAATTTGCATTTT 18328
|||||| ||||| ||
Sbjct 2307 AAAAATCTGCATCTT 2321
>seq5492
Length=9153
Score = 82.4 bits (90), Expect = 6e-11
Identities = 108/149 (72%), Gaps = 2/149 (1%)
Strand=Plus/Minus
Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143
||| |||| ||| | | || || ||||| | || | ||||| || || || ||||||
Sbjct 3843 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA 3784
Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203
||||||||||| | || || | ||||||| ||| ||||| ||| |||| ||||||
Sbjct 3783 ATGTTGTAGTCAGACAAAGTGCACCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTT 3724
Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATC 18232
|| ||||| || | |||||||||||
Sbjct 3723 TGCTGATCAGGAGGAATTCCTTCCTTATC 3695
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 378601967572500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |