Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq124007 129 5e-25 seq48881 102 7e-17 seq104951 91.5 1e-13 seq63810 91.5 1e-13 seq33159 91.5 1e-13 seq5492 87.8 2e-12 >seq124007 Length=20016 Score = 129 bits (142), Expect = 5e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 ||||||| |||||| || |||||||| ||||| || || |||||||| || || |||| Sbjct 15515 CCACCTCATCTTTGCTTGTATACTCTACTATTTCTGTGCACAGATTGCTGCATTTGATCG 15456 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 | |||| || |||||||||||| || || || ||||| |||||||||||||| || | Sbjct 15455 TTCCCAGGTTCTGCTGGTTGCTTTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGG 15396 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 | || ||||| ||||||||| ||||| || Sbjct 15395 TACCTGTCTCTGTCTGCGACTCAATGATGGC 15365 >seq48881 Length=14873 Score = 102 bits (112), Expect = 7e-17 Identities = 163/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| |||||||||||||| ||||| ||||| ||||| || |||||| | || || || Sbjct 7618 TCAAA-ATGCAAATTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAG 7560 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || ||||| | || | || || | || ||| ||||| ||| | || || Sbjct 7559 CCCAGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCT 7500 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || || || ||||| ||| ||||||| ||| | || Sbjct 7499 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAC 7440 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || ||||| ||||| || || ||||| || | |||||||| || Sbjct 7439 TACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGGGGTGG 7387 >seq104951 Length=12537 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTT-GAACCGTC 31251 ||||| || || | || || ||||||||||| || ||||| || | | | || || Sbjct 11243 ATGCAGATCTTTGGGAAAACCCTGACAGGCAAGACCATCACACTCAAAGGTCGAGCCCAG 11184 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | |||| |||||| | ||| |||||||| ||| | || || ||||| Sbjct 11183 TGACACTATTGAAAACGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCA 11124 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || | ||||||||| |||| || ||| | || ||||| Sbjct 11123 GCAGCGTCTGATTTTTGTGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTATAA 11064 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| | ||||| || ||||| || |||| ||| | ||| |||| |||| Sbjct 11063 CATCGAGAAAGAGTCCACTCTGCACTTGGTGCTTCGTCTGTGGGGTGGTA 11014 >seq63810 Length=35167 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| || || || |||||| | || || || || Sbjct 27914 CATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 27855 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || ||||| || ||| | || || ||||| Sbjct 27854 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCA 27795 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||||| | || || || ||||||||| ||||||| | | | ||| || ||| || | Sbjct 27794 GCAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGA-TGGACGCACTCTGTCCGACTACA 27736 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| || ||||| || ||||| || ||||| || Sbjct 27735 ACATCCAGAAAGAGTCCACTCTGCACCTGGTCCT 27702 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| || || || |||||| | || || || || Sbjct 27686 CATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 27627 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || ||||| || ||| | || || ||||| Sbjct 27626 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCA 27567 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||||| | || || || ||||||||| ||||||| | | | ||| || ||| || | Sbjct 27566 GCAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGA-TGGACGCACTCTGTCCGACTACA 27508 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| || || || || ||||| || ||||| || Sbjct 27507 ACATCCAGAAGGAGTCCACTCTGCACCTGGTCCT 27474 >seq33159 Length=15523 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||| || || || || || || || || |||||| |||| |||||||| Sbjct 2321 AAGATGCAGATTTTTGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCC 2262 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | ||| ||| ||||||| | || || || Sbjct 2261 TCAGATACAATAGAAAATGTAAAGGCCAAGATACAGGATAAGGAAGAAATTCCTCCTGAT 2202 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 | | | | || || || |||||||| || ||||||| | ||| ||| || || || Sbjct 2201 CTGTAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGATGCACTGTGTCTGACTA 2143 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 2142 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 2101 >seq5492 Length=9153 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || || || || || || || |||||| |||| |||||||| Sbjct 3599 AAGATGCAGATTTTCGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCC 3658 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 | || | |||| || || | || ||| |||||||| | || || || Sbjct 3659 TTGGATACAAAAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 3718 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || |||||||| || |||||| | || ||| || || || Sbjct 3719 CAGCAAAGACTGATCTTTGCTGGCAAGCAACGGGAAGA-TGGGTGCACTTTGTCTGACTA 3777 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 3778 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 3819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444872081160000