Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq124007 129 5e-25
seq48881 102 7e-17
seq104951 91.5 1e-13
seq63810 91.5 1e-13
seq33159 91.5 1e-13
seq5492 87.8 2e-12
>seq124007
Length=20016
Score = 129 bits (142), Expect = 5e-25
Identities = 119/151 (79%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105
||||||| |||||| || |||||||| ||||| || || |||||||| || || ||||
Sbjct 15515 CCACCTCATCTTTGCTTGTATACTCTACTATTTCTGTGCACAGATTGCTGCATTTGATCG 15456
Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165
| |||| || |||||||||||| || || || ||||| |||||||||||||| || |
Sbjct 15455 TTCCCAGGTTCTGCTGGTTGCTTTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGG 15396
Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196
| || ||||| ||||||||| ||||| ||
Sbjct 15395 TACCTGTCTCTGTCTGCGACTCAATGATGGC 15365
>seq48881
Length=14873
Score = 102 bits (112), Expect = 7e-17
Identities = 163/233 (70%), Gaps = 1/233 (0%)
Strand=Plus/Minus
Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246
||||| |||||||||||||| ||||| ||||| ||||| || |||||| | || || ||
Sbjct 7618 TCAAA-ATGCAAATTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAG 7560
Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306
|| ||||| | || | || || | || ||| ||||| ||| | || ||
Sbjct 7559 CCCAGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCT 7500
Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366
||||||||| | || || || || ||||| ||| ||||||| ||| | ||
Sbjct 7499 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAC 7440
Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| ||||| || ||||| ||||| || || ||||| || | |||||||| ||
Sbjct 7439 TACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGGGGTGG 7387
>seq104951
Length=12537
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/230 (69%), Gaps = 1/230 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTT-GAACCGTC 31251
||||| || || | || || ||||||||||| || ||||| || | | | || ||
Sbjct 11243 ATGCAGATCTTTGGGAAAACCCTGACAGGCAAGACCATCACACTCAAAGGTCGAGCCCAG 11184
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | | |||| |||||| | ||| |||||||| ||| | || || |||||
Sbjct 11183 TGACACTATTGAAAACGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCA 11124
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||||||| || || | ||||||||| |||| || ||| | || |||||
Sbjct 11123 GCAGCGTCTGATTTTTGTGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTATAA 11064
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||| | ||||| || ||||| || |||| ||| | ||| |||| ||||
Sbjct 11063 CATCGAGAAAGAGTCCACTCTGCACTTGGTGCTTCGTCTGTGGGGTGGTA 11014
>seq63810
Length=35167
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| |||| || || || |||||| | || || || ||
Sbjct 27914 CATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 27855
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| | || ||||| || ||| | || || |||||
Sbjct 27854 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCA 27795
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370
|||||| | || || || ||||||||| ||||||| | | | ||| || ||| || |
Sbjct 27794 GCAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGA-TGGACGCACTCTGTCCGACTACA 27736
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|||| || ||||| || ||||| || ||||| ||
Sbjct 27735 ACATCCAGAAAGAGTCCACTCTGCACCTGGTCCT 27702
Score = 86.0 bits (94), Expect = 6e-12
Identities = 149/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| |||| || || || |||||| | || || || ||
Sbjct 27686 CATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 27627
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| | || ||||| || ||| | || || |||||
Sbjct 27626 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCA 27567
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370
|||||| | || || || ||||||||| ||||||| | | | ||| || ||| || |
Sbjct 27566 GCAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGA-TGGACGCACTCTGTCCGACTACA 27508
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|||| || || || || ||||| || ||||| ||
Sbjct 27507 ACATCCAGAAGGAGTCCACTCTGCACCTGGTCCT 27474
>seq33159
Length=15523
Score = 91.5 bits (100), Expect = 1e-13
Identities = 155/222 (70%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| ||||| || || || || || || || || |||||| |||| ||||||||
Sbjct 2321 AAGATGCAGATTTTTGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCC 2262
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| || | | |||| || || | ||| ||| ||||||| | || || ||
Sbjct 2261 TCAGATACAATAGAAAATGTAAAGGCCAAGATACAGGATAAGGAAGAAATTCCTCCTGAT 2202
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
| | | | || || || |||||||| || ||||||| | ||| ||| || || ||
Sbjct 2201 CTGTAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGATGCACTGTGTCTGACTA 2143
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||||||||||| || || ||||||||||| || | |||||
Sbjct 2142 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 2101
>seq5492
Length=9153
Score = 87.8 bits (96), Expect = 2e-12
Identities = 154/222 (69%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| || || || || || || || |||||| |||| ||||||||
Sbjct 3599 AAGATGCAGATTTTCGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCC 3658
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
| || | |||| || || | || ||| |||||||| | || || ||
Sbjct 3659 TTGGATACAAAAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 3718
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
||||| | || || || |||||||| || |||||| | || ||| || || ||
Sbjct 3719 CAGCAAAGACTGATCTTTGCTGGCAAGCAACGGGAAGA-TGGGTGCACTTTGTCTGACTA 3777
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||||||||||| || || ||||||||||| || | |||||
Sbjct 3778 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 3819
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 444872081160000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |