Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq95845 131 2e-25
seq85480 120 4e-22
seq113483 111 2e-19
seq88024 100 4e-16
seq124007 96.9 4e-15
seq92079 84.2 3e-11
>seq95845
Length=12527
Score = 131 bits (144), Expect = 2e-25
Identities = 111/137 (81%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447
|| || |||||||| ||||| ||||| |||||||| || || |||||||| ||||| |
Sbjct 950 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATG 891
Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507
|||||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||
Sbjct 890 GACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 831
Query 62508 CTATTTCTAAGACCGTA 62524
|||||||| | ||| ||
Sbjct 830 CTATTTCTTATACCATA 814
>seq85480
Length=19824
Score = 120 bits (132), Expect = 4e-22
Identities = 99/121 (82%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| ||||| ||||| | |||||| ||||||||||| || ||||| || || || || |
Sbjct 17793 CCTCATCTCTGCTAATAAGTTCGTTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 17734
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||| ||||| || || || || || ||||||||||||||||||||||| ||||| |
Sbjct 17733 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAG 17674
Query 33724 C 33724
|
Sbjct 17673 C 17673
Score = 87.8 bits (96), Expect = 2e-12
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901
|||||| | ||||| || || | ||||||||||| || ||||| |||||||| |||||
Sbjct 15901 ATCTTTGATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGTATGTTTTCCATGGC 15842
Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947
|| || || || |||||||| | || || |||||||| ||||||
Sbjct 15841 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCT 15796
>seq113483
Length=38257
Score = 111 bits (122), Expect = 2e-19
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548
|||||||||||||||| ||| || | |||||||| | ||||||||||||||||
Sbjct 28891 GTTACTTTCTATGATGTATATATTATTCTGCAAGCTTTTGTACTGACTACTGCAGTGTTC 28832
Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607
|||| | ||||| || |||||||||||| |||||||||||||| ||| ||| | ||||
Sbjct 28831 CTTGGTTTGACTCTATATACTCTACAATCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 28773
Score = 87.8 bits (96), Expect = 2e-12
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 188378 GGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATCTG 188437
|||||| | || || |||| |||||||||||| |||||||||| |||||||| || |||
Sbjct 33965 GGATCTTTGGGTTTCCTTTTAGCATTGACTTTAAACAGACATAAGCATCCCCTTAACCTG 33906
Query 188438 TACCTACTTTGTGGATTT 188455
||||| |||| |||||||
Sbjct 33905 TACCTGCTTTTTGGATTT 33888
Score = 84.2 bits (92), Expect = 3e-11
Identities = 60/69 (87%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 188173 GCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCACA 188232
|||| || |||||||||||||||||||||| ||||| ||||| ||||||||| ||||||
Sbjct 37145 GCTCTTCGATCGAGGACGACTTCAACTATGGCAGCTGCGTGGCCTCTGCCAGCTTGCACA 37086
Query 188233 TACGAATGG 188241
| || ||||
Sbjct 37085 TCCGGATGG 37077
Score = 82.4 bits (90), Expect = 1e-10
Identities = 85/110 (77%), Gaps = 1/110 (1%)
Strand=Plus/Minus
Query 188241 GCATTTCTAAGAAAAGTCTACGGTATCCTTG-TCTACAATTTCCTTTAACAACGGCAACA 188299
|| |||||||||||||||||| | |||||| ||| ||| ||| ||||| || |||
Sbjct 35064 GCCTTTCTAAGAAAAGTCTACAGCATCCTTTCTCTGCAAGTTCTCTTAACTACAATGACA 35005
Query 188300 GCTGCAGTATTTTTATACTTTGAATGCATTCGGACATTTATACAAGGGAG 188349
||||| | ||||||||||||| | || ||||| |||||||| || ||
Sbjct 35004 ACTGCATTTGTTTTATACTTTGAGTCTATACGGACGTTTATACATGGAAG 34955
>seq88024
Length=2735
Score = 100 bits (110), Expect = 4e-16
Identities = 178/257 (69%), Gaps = 7/257 (3%)
Strand=Plus/Plus
Query 31299 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 31356
||| || || ||||| ||| ||| | ||| | |||| ||||| | ||| |||||
Sbjct 1808 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTTAGTGTA--ATCTAAAACTTGAACTTCC 1865
Query 31357 TCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31416
|| | ||| || ||| | || |||| | | || ||||| || |||| ||| || | ||
Sbjct 1866 TCTATTTCAGGGTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 1925
Query 31417 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31476
|| | |||| | ||| ||| ||||| || | || || || ||||| || ||||||
Sbjct 1926 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCCATATTTCCTCTGTAATCT 1985
Query 31477 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 31533
|||||||| ||||| |||||| ||| || | |||| | || ||||| | |||
Sbjct 1986 TCGTCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGTAGCCAATCCAGAACGTGGA 2045
Query 31534 GCTATTCTACCATAGCA 31550
|||| ||| ||||| ||
Sbjct 2046 GCTACTCTTCCATAACA 2062
>seq124007
Length=20016
Score = 96.9 bits (106), Expect = 4e-15
Identities = 113/153 (74%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322
|| |||||||||||| |||||||| ||||||||||| || | || || || || | |
Sbjct 14160 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 14101
Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382
|| || || |||||||| ||||| || | ||| || ||| | | || || |||||||
Sbjct 14100 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 14041
Query 63383 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63415
|| |||||||| || || | ||||||| ||
Sbjct 14040 AGGCTCCAAGTAAATAGCAAATGCTCCAGGTCG 14008
Score = 96.9 bits (106), Expect = 4e-15
Identities = 134/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 62628 TATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687
|| || |||||||| || | || || || || | ||| || || || || || || |||
Sbjct 18915 TAGGTTTCATATGGGCCATGCTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATAA 18856
Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747
||||||||||||||||| | |||||| | || || || || || ||||| |||||
Sbjct 18855 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 18796
Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807
| | |||||||| || || || | ||||| || ||||| || || || | ||| |
Sbjct 18795 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACTCCAATTCCAATGGGGCGATGGCGT 18736
Query 62808 TTATTAGA 62815
||||| ||
Sbjct 18735 TTATTTGA 18728
>seq92079
Length=13920
Score = 84.2 bits (92), Expect = 3e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025
|||||||||||||| ||||||||||||||||||||||| || || | || ||||||
Sbjct 5738 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAAAA 5797
Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 34081
|| || || |||| | | || || ||||| | | || ||| || || | ||| ||
Sbjct 5798 TACTTCTCCTCTGCTTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGACAAATCAAC 5853
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628554028440000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |