Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq85480 111 1e-19
seq95845 105 6e-18
seq15580 95.1 1e-14
seq92079 82.4 7e-11
>seq85480
Length=19824
Score = 111 bits (122), Expect = 1e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| ||||| || || ||||| || ||||| || | || ||||||| ||||||||| ||
Sbjct 17791 TCATCTCTGCTAATAAGTTCGTTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 17732
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| ||||| | ||||| |||||||||||||| ||||| || || || ||||| |||
Sbjct 17731 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAGCT 17672
Query 11774 ACTACTCTTTCTCC 11787
|| || | ||||||
Sbjct 17671 ACAACACGTTCTCC 17658
>seq95845
Length=12527
Score = 105 bits (116), Expect = 6e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || || ||||| | || || || ||||| |||||||||||||||
Sbjct 950 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATG 891
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | | || |||| || || ||||||||||| || || || || |
Sbjct 890 GACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 831
Query 37258 CTATTTCTCAATCCAT 37273
|||||||| | ||||
Sbjct 830 CTATTTCTTATACCAT 815
>seq15580
Length=3375
Score = 95.1 bits (104), Expect = 1e-14
Identities = 88/112 (79%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || |||||||| ||||| || | || ||||| | |||| ||| |
Sbjct 3262 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTTTTCT 3321
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGC 11763
||| ||| |||||||||||||| || || || ||||| ||||| || |||||
Sbjct 3322 TTAACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGC 3373
>seq92079
Length=13920
Score = 82.4 bits (90), Expect = 7e-11
Identities = 81/105 (77%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949
|||||| | ||||||||||||| || || ||||| ||||| || | ||| || |||
Sbjct 4832 ATCTCTGATGTATGTATCTATTAGCAAGCTGTACATCTCTGAGTGGACATTCTCGATAAG 4891
Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATC 11994
|||||||| ||||||||||| || ||||||| | ||| || ||
Sbjct 4892 AATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGCACCTC 4936
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 467584822120000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |