Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq113483 174 2e-38
seq95845 134 2e-26
seq85480 129 8e-25
seq124007 96.9 5e-15
seq88024 91.5 2e-13
seq15580 86.0 8e-12
>seq113483
Length=38257
Score = 174 bits (192), Expect = 2e-38
Identities = 153/191 (80%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290
|| ||| ||| | ||||||||| | | | || || | ||| ||||||||||||||||||
Sbjct 24565 TTTTTACTAGCTGCTTCCAAAAACCGCAGGAGGTGAAGGAATAGATTGATGATATCCAAG 24624
Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350
|||| || || | |||||| ||||| |||||||| |||||| |||| || ||||||||
Sbjct 24625 TAGAGGTTAATGGCGGCTAATACATACTCTTCAGGTGAGAGCCTATGCATCAGTGAGTGT 24684
Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410
||||||||||| |||||||| ||||| | |||||| || | ||||| || ||||| |||
Sbjct 24685 GTGTCATAGATGATGAATCCACAGAAAAGAAGGGCTCCTACAGCAGCCACGACCAATTCC 24744
Query 9411 ACTGTTTCACT 9421
| ||| |||||
Sbjct 24745 ATTGTCTCACT 24755
Score = 138 bits (152), Expect = 1e-27
Identities = 102/119 (86%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 9480 ccTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539
|||||||||| ||| |||||||||||||| ||||||||||||||| ||||| | ||||
Sbjct 28773 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGATTGTAGAGTATATAGAGTCAAACCAAGG 28832
Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598
||||||||||||||||| | |||||||||| || | || |||||||||||||||||
Sbjct 28833 AACACTGCAGTAGTCAGTACAAAAGCTTGCAGAATAATATATACATCATAGAAAGTAAC 28891
Score = 91.5 bits (100), Expect = 2e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 9738 CTCCCTTGTATAATTTTCCGCATGCAGTCAAAGTATAAAAATACTGCAGTTGTTGCCGTT 9797
|| || ||||||| |||| || | ||||||||||||| | ||||||||| ||
Sbjct 34955 CTTCCATGTATAAACGTCCGTATAGACTCAAAGTATAAAACAAATGCAGTTGTCATTGTA 35014
Query 9798 GTTAAAAGAAATTGTAGACAAAGGATACCGTAGACTTTTCTTAGAAATGC 9847
||||| |||| ||| ||| ||||||| | |||||||||||||||||| ||
Sbjct 35015 GTTAAGAGAACTTGCAGAGAAAGGATGCTGTAGACTTTTCTTAGAAAGGC 35064
Score = 84.2 bits (92), Expect = 3e-11
Identities = 60/69 (87%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906
|||| || ||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 37077 CCATCCGGATGTGCAAGCTGGCAGAGGCCACGCAGCTGCCATAGTTGAAGTCGTCCTCGA 37136
Query 9907 TGGAGGAGC 9915
| || ||||
Sbjct 37137 TCGAAGAGC 37145
>seq95845
Length=12527
Score = 134 bits (148), Expect = 2e-26
Identities = 112/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240
|| ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| |
Sbjct 950 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATG 891
Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300
|||||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||
Sbjct 890 GACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 831
Query 65301 CTATTTCTAAGACCGTA 65317
|||||||| | ||| ||
Sbjct 830 CTATTTCTTATACCATA 814
>seq85480
Length=19824
Score = 129 bits (142), Expect = 8e-25
Identities = 101/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| ||||| | |||||||||||||||||| || ||||| || || || || |
Sbjct 17793 CCTCATCTCTGCTAATAAGTTCGTTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 17734
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||| ||||| || ||||| || ||||||||||| |||||||||||||| ||||| |
Sbjct 17733 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAG 17674
Query 36300 C 36300
|
Sbjct 17673 C 17673
Score = 93.3 bits (102), Expect = 6e-14
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477
|||||| | || || ||||| | ||||||||||| || ||||| |||||||| |||||
Sbjct 15901 ATCTTTGATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGTATGTTTTCCATGGC 15842
Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523
||||| || || |||||||| | || || |||||||| ||||||
Sbjct 15841 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCT 15796
>seq124007
Length=20016
Score = 96.9 bits (106), Expect = 5e-15
Identities = 113/153 (74%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115
|| |||||||||||| |||||||| ||||||||||| || | || | || |||| |
Sbjct 14160 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 14101
Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175
|| || || |||||||| ||||| || | ||| || ||| | | || || |||||||
Sbjct 14100 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 14041
Query 66176 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 66208
|| |||||||| || || | ||||||| ||
Sbjct 14040 AGGCTCCAAGTAAATAGCAAATGCTCCAGGTCG 14008
Score = 91.5 bits (100), Expect = 2e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 65421 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480
|| || || ||||| || | || || || || ||||| || || || || || || |||
Sbjct 18915 TAGGTTTCATATGGGCCATGCTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATAA 18856
Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540
||||||||||| ||||| | |||||| | || || || | || ||||| |||||
Sbjct 18855 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 18796
Query 65541 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 65600
| | |||||||| || ||||| | ||||| || ||||| || || || | ||| |
Sbjct 18795 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACTCCAATTCCAATGGGGCGATGGCGT 18736
Query 65601 TTATTAGA 65608
||||| ||
Sbjct 18735 TTATTTGA 18728
Score = 87.8 bits (96), Expect = 2e-12
Identities = 119/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858
|||| || | ||| || ||||||||||| | || || || || || || || || | ||
Sbjct 2866 CACTGAACACTTTCTTCGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAAAA 2807
Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918
|||| || || || || | ||||| | || || ||| |||| || |||| ||| || |
Sbjct 2806 TGGCGTAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 2747
Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964
||| || || || || ||| | |||| |||||||| || |||||
Sbjct 2746 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2701
>seq88024
Length=2735
Score = 91.5 bits (100), Expect = 2e-13
Identities = 176/257 (68%), Gaps = 7/257 (3%)
Strand=Plus/Plus
Query 33900 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 33957
||| || || ||||| ||| ||| | ||| | |||| ||||| | ||| |||||
Sbjct 1808 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTTAGTGTA--ATCTAAAACTTGAACTTCC 1865
Query 33958 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 34017
| | ||| || ||| | || |||| | | || ||||| || |||| ||| ||| | ||
Sbjct 1866 TCTATTTCAGGGTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 1925
Query 34018 ACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 34077
|| | || | ||| ||| ||||| || | || || |||||||| || ||||||
Sbjct 1926 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCCATATTTCCTCTGTAATCT 1985
Query 34078 TCGTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACCAGACCTAGGA 34134
|||||||| ||||| |||||| ||| || |||| | || ||||| | |||
Sbjct 1986 TCGTCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGTAGCCAATCCAGAACGTGGA 2045
Query 34135 GCTATTCTACCATAGCA 34151
|||| ||| ||||| ||
Sbjct 2046 GCTACTCTTCCATAACA 2062
>seq15580
Length=3375
Score = 86.0 bits (94), Expect = 8e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241
|| ||||| || || | ||| |||||||| ||||| || ||||| || || | || ||
Sbjct 3264 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTTTTCTTT 3323
Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 36291
| ||| ||||| | ||||| ||||| || ||||||||||||||||| ||
Sbjct 3324 AACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGC 3373
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 656852340820000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |