Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq63810 113 4e-20 seq5492 91.5 1e-13 seq48881 87.8 2e-12 seq157463 82.4 8e-11 seq33159 82.4 8e-11 >seq63810 Length=35167 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||| | || | ||| | || |||||||| || ||||| || ||| Sbjct 27686 GCCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGA 27745 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || |||| || | ||||| |||||||| || ||| |||||| || ||||| || || | Sbjct 27746 CAGAGTGCGTCCA-TCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGG 27804 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | ||||| |||||||| ||| || || | | || | ||||| ||||||||| Sbjct 27805 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCA 27864 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | ||||| |||||||| || || ||||| || ||||| Sbjct 27865 CCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27913 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||| | || | ||| | || ||||| || || ||||| || ||| Sbjct 27458 GCCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 27517 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || |||| || | ||||| |||||||| || ||| |||||| || ||||| || || | Sbjct 27518 CAGAGTGCGTCCA-TCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGG 27576 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | ||||| |||||||| ||| || || | | || | ||||| ||||||||| Sbjct 27577 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCA 27636 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | ||||| |||||||| || || ||||| || ||||| Sbjct 27637 CCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27685 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||| | || | ||| | || ||||| || || ||||| || ||| Sbjct 27914 GCCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 27973 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || |||| || | ||||| |||||||| || ||| |||||| || ||||| || || | Sbjct 27974 CAGAGTGCGTCCA-TCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGG 28032 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | ||||| |||||||| ||| || || | | || | ||||| ||||||||| Sbjct 28033 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCA 28092 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | ||||| |||||||| || || || || || ||||| Sbjct 28093 CCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 28141 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || ||||| || || ||||| || ||| || |||| || | ||||| |||||||| || Sbjct 27261 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCA-TCTTCCAGCTGTTTGCC 27319 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| |||||| | ||||| || || || |||| |||||||| ||| || || Sbjct 27320 GGCAAAGATCAACCTCTGCTGGTCAGGGGGGCTGCCCTCTTTGTCTTGGATCTTGGCCTT 27379 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| ||||||||||||| | ||| | | || |||||| | || Sbjct 27380 GACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGACTGACCGGTCGAGGT 27439 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 27440 CTTCACGAAGATCTGCAT 27457 >seq5492 Length=9153 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| ||||||||||| || || || |||| | ||||| | || Sbjct 3804 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCACCCATCTTCCCGTTGC 3745 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| ||||||| | ||||||||| ||||| || ||||| || || ||| || Sbjct 3744 TTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 3685 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 |||| | ||| ||| || ||| || ||||| | ||| | ||||| || || Sbjct 3684 GCCTTTACATTTTCTTTTGTATCCAAGGGTTCAACCTCGAGGGTGATGGTCTTCCCAGTA 3625 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 3624 AGGGTTTTCACGAAAATCTGCAT 3602 >seq48881 Length=14873 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || | ||| | || |||||||| || ||||| || || | |||| Sbjct 7398 ACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCC 7457 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| || || ||| |||| || | ||||| || || || ||||| || || Sbjct 7458 ATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTT 7517 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| || || | | || | |||||| ||||||||||||| | ||| | Sbjct 7518 ATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGAT 7577 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || ||||| |||||||| Sbjct 7578 GGTCTTGCCCGTCAGGGTCTTCACGAAAATTTGCAT 7613 >seq157463 Length=7943 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || ||||||||||||||||| || || || || | || | ||||| ||||| Sbjct 358 TGAAGAGTGGACTCTTTTTGAATGTTGTAGTCTGACAAAGTACGTCCA-TCTTCCAGCTG 416 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||| | | ||||||| | ||||| || ||||| || || | | || Sbjct 417 CTTGCCAGCAAAGATCGGTCTTTGCTGAGCAGGAGGAATTCCTTCCTTATCCTGGGTCTT 476 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | ||| | ||| | | ||| || ||||||| || | ||||| || || Sbjct 477 GGCCTTTATATTTTCTATTGTACCCGAGGGTTCAACCTCAAGAGTGATGGTCTTCCCAGT 536 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | |||| ||||| | ||||| Sbjct 537 AAGGATTTTCACGAAAAGCTGCAT 560 >seq33159 Length=15523 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || ||||| ||||||||||| || || || |||| || | ||||| || || Sbjct 2116 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACACAGTGCATCCA-TCTTCCAGTTG 2174 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||||| | || | |||| ||||| || |||| || || || || Sbjct 2175 CTTGCCAGCAAAGATCAGTCTTTACAGATCAGGAGGAATTTCTTCCTTATCCTGTATCTT 2234 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | ||| | ||| || | ||| || ||||| | ||| | ||||| || || Sbjct 2235 GGCCTTTACATTTTCTATTGTATCTGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCAGT 2294 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| || || || ||||| Sbjct 2295 AAGGGTTTTCACAAAAATCTGCAT 2318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495068771600000