Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq85480 147 3e-30 seq95845 131 2e-25 seq88024 118 2e-21 seq124007 102 1e-16 >seq85480 Length=19824 Score = 147 bits (162), Expect = 3e-30 Identities = 108/126 (86%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| |||||||||||||||||||| || ||||| || || || || | Sbjct 17793 CCTCATCTCTGCTAATAAGTTCGTTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 17734 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || |||||||||||||||||||||||||||||||| | Sbjct 17733 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAG 17674 Query 50102 CAACAA 50107 | |||| Sbjct 17673 CTACAA 17668 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||| | ||||| || || | ||||||||||| || ||||| |||||||| ||||| Sbjct 15901 ATCTTTGATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGTATGTTTTCCATGGC 15842 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || || || || |||||||| | || || |||||||| |||||| Sbjct 15841 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCT 15796 >seq95845 Length=12527 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| |||||||| || || |||||||||||||| | Sbjct 950 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATG 891 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || ||||||||||||| || ||||||||||| || || ||||| || || | | |||| Sbjct 890 GACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 831 Query 79180 CTATTTCTAAGACCGTA 79196 |||||||| | ||| || Sbjct 830 CTATTTCTTATACCATA 814 >seq88024 Length=2735 Score = 118 bits (130), Expect = 2e-21 Identities = 182/257 (71%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 47703 TCCAGTTGATCCAAACCCT--TGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCC 47760 |||||| || ||||| ||| ||| | ||| | |||| ||||| | ||| |||||| Sbjct 1808 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTTAGTGTA--ATCTAAAACTTGAACTTCC 1865 Query 47761 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTT 47820 || | ||| || ||| | || |||| | | || ||||| || |||| ||| ||| | || Sbjct 1866 TCTATTTCAGGGTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 1925 Query 47821 ACATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 47880 || | ||| | ||| ||| ||||| || | || || || ||||| || |||||| Sbjct 1926 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCCATATTTCCTCTGTAATCT 1985 Query 47881 TCGTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGA 47937 |||||||| |||||| |||||| ||| || | |||| | || |||||| | ||| Sbjct 1986 TCGTCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGTAGCCAATCCAGAACGTGGA 2045 Query 47938 GCTATTCTACCATAGCA 47954 |||| ||| ||||| || Sbjct 2046 GCTACTCTTCCATAACA 2062 >seq124007 Length=20016 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| ||||||||||| || | || || || |||| | ||| Sbjct 14156 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 14097 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| || ||| | | || || ||||||| || Sbjct 14096 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 14037 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTCG 80087 |||||||| || || | |||| ||||| Sbjct 14036 TCCAAGTAAATAGCAAATGCTCCAGGTCG 14008 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 79299 GTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTA 79358 ||| |||||||| || || | || | ||| | ||||| || || || || ||||| || Sbjct 18916 GTAGGTTTCATATGGGCCATGCTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATA 18857 Query 79359 ATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATA 79418 |||||||||||| || || | |||||| | || || ||| | || ||||| ||||| Sbjct 18856 ATAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATA 18797 Query 79419 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 79478 | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 18796 CCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACTCCAATTCCAATGGGGCGATGGCG 18737 Query 79479 CTTATTAGA 79487 ||||| || Sbjct 18736 TTTATTTGA 18728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716827773220000