Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq48881 89.7 3e-13 >seq48881 Length=14873 Score = 89.7 bits (98), Expect = 3e-13 Identities = 153/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| |||| |||| ||||||||||| || || ||||| ||||| | | || | Sbjct 7399 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 7458 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| ||||| || ||| || | | |||||||| | ||| ||||| || || Sbjct 7459 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTA 7518 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || ||| |||| | || | | ||| |||||| |||| | || ||||| || Sbjct 7519 TCCTGGATCTTGGCCT---TCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTG 7575 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || || ||||| || || || |||||||||||||| || Sbjct 7576 ATGGTCTTGCCCGTCAGGGTCTTCACGAAAATTTGCATTTT 7616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318154041129000