Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq48881 89.7 3e-13
>seq48881
Length=14873
Score = 89.7 bits (98), Expect = 3e-13
Identities = 153/221 (69%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
|||| |||| |||| ||||||||||| || || ||||| ||||| | | || |
Sbjct 7399 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 7458
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274
|| |||| ||||| || ||| || | | |||||||| | ||| ||||| || ||
Sbjct 7459 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTA 7518
Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| ||| |||| | || | | ||| |||||| |||| | || ||||| ||
Sbjct 7519 TCCTGGATCTTGGCCT---TCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTG 7575
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372
|| || || ||||| || || || |||||||||||||| ||
Sbjct 7576 ATGGTCTTGCCCGTCAGGGTCTTCACGAAAATTTGCATTTT 7616
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318154041129000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |