Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq15580 98.7 9e-16
seq82175 84.2 2e-11
seq14641 84.2 2e-11
>seq15580
Length=3375
Score = 98.7 bits (108), Expect = 9e-16
Identities = 89/112 (79%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232
|||||||||| || || || || || ||||| || || || |||||||| |||| ||| |
Sbjct 3262 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTTTTCT 3321
Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGC 13284
| | ||| |||||||||||||| || ||||| || || |||||||| || ||
Sbjct 3322 TTAACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGC 3373
>seq82175
Length=13617
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922
||||| || ||||| ||| ||||| || |||||||| |||||||| ||||| ||||||
Sbjct 917 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 858
Query 12923 ATAAAATCGAAAGGATTTT 12941
|||||||| || |||||||
Sbjct 857 ATAAAATCAAAGGGATTTT 839
>seq14641
Length=5504
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039
||||||||||| ||||| || || ||||||||||| ||| |||| |||||||| || | |
Sbjct 2651 AATCTGTCAGCTACAAATTCAATATACTGTTTCATCAAAACACAATTCATTCCAATAAGT 2592
Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065
|| |||| ||||||||||||||
Sbjct 2591 CCAACTGGCAAGGCTTCTGTTAAAAA 2566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430139358021000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |