Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq12448 172 1e-37 seq33159 168 2e-36 seq5492 168 2e-36 seq90327 145 2e-29 seq66463 132 1e-25 seq74389 107 4e-18 seq15580 107 4e-18 seq109872 104 5e-17 seq2401 104 5e-17 seq113583 102 2e-16 seq78565 102 2e-16 seq85480 98.7 2e-15 seq123873 89.7 1e-12 seq88024 87.8 4e-12 seq102344 84.2 5e-11 >seq12448 Length=17785 Score = 172 bits (190), Expect = 1e-37 Identities = 166/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || | ||||| || |||||||| | ||| | || ||||| Sbjct 3334 ACAAGATGAAGGGTGGACTCCTGTTGAATGTTTTAGTCAGACACAGTGCATCCATCTTCC 3393 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || || ||||| || || || || |||| |||||| ||||||||||||||||| Sbjct 3394 AGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGATTAGGAGGAATTCCTTCTTTATCCTGG 3453 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| |||||||||||||||| ||||| ||||| ||||| || || || ||||| Sbjct 3454 ATCTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTC 3513 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 |||||||| ||||| || || |||||||| ||| Sbjct 3514 CCAGTAAGGGTTTTCACGAAAATCTGCATCTTG 3546 >seq33159 Length=15523 Score = 168 bits (186), Expect = 2e-36 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || ||||| || |||||||| | ||| | || ||||| Sbjct 2110 ACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACACAGTGCATCCATCTTCC 2169 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || || || | |||||||||| ||| |||| |||||||| Sbjct 2170 AGTTGCTTGCCAGCAAAGATCAGTCTTTACAGATCAGGAGGAATTTCTTCCTTATCCTGT 2229 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| ||||| ||||| ||||| || || || ||||| Sbjct 2230 ATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAACCTCGAGGGTGATGGTCTTC 2289 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 |||||||| ||||| ||||| |||||||| ||| Sbjct 2290 CCAGTAAGGGTTTTCACAAAAATCTGCATCTTG 2322 >seq5492 Length=9153 Score = 168 bits (186), Expect = 2e-36 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || ||||| || |||||||| | ||| | || ||||| Sbjct 3810 ACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCACCCATCTTCC 3751 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 |||| || |||||||| || || || || ||||||||||| |||||||| |||||||| Sbjct 3750 CGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 3691 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || |||||||||||| ||||| ||||| ||||| || || || ||||| Sbjct 3690 ATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGTTCAACCTCGAGGGTGATGGTCTTC 3631 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 |||||||| ||||| || || |||||||| ||| Sbjct 3630 CCAGTAAGGGTTTTCACGAAAATCTGCATCTTG 3598 >seq90327 Length=63722 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || || || | ||| || |||||||| | || | || ||||| ||| Sbjct 54690 AGATGAAGAGTGGACTCCTTTTAAATGTTGTAGTCAGACAAGGTACATCCATCTTCCAGT 54631 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || |||||||| | || || || ||||||||||| |||||||| |||||||| ||| Sbjct 54630 TGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATC 54571 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || ||||||||||||||| ||||| ||||| ||||| || || || ||||| || Sbjct 54570 TTGGCTTTTACATTTTCTCTTGTATCTGAGGGTTCAACCTCAAGAGTGATGGTCTTCCCG 54511 Query 104534 GTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||| | |||| | || |||||||| ||| Sbjct 54510 GTATGGGTTTCCATGAAAATCTGCATCTTG 54481 >seq66463 Length=18175 Score = 132 bits (146), Expect = 1e-25 Identities = 123/155 (79%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465 |||| ||||| || |||||||| | ||||| || ||| ||||||| ||||||||||||| Sbjct 9781 CTTCCAGTTGCTTGCCAGCAAAGCTCAGCCTTTGCTGAGCAGGAGGAATTCCTTCTTTAT 9722 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 || | ||||| || ||||||||||||| ||||| ||||| |||| || || || | Sbjct 9721 CCCGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAGCCTCCAGAGTGATGG 9662 Query 104526 -TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| |||||||| ||||| || || |||||||| Sbjct 9661 TTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCAT 9627 >seq74389 Length=16610 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| ||||||||||| || ||||| | || || || | ||||| || Sbjct 10463 GTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTCCATCTGTTTGCCG 10404 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || || || ||||| || || || || || | || || || ||||| Sbjct 10403 GCAAAAATCAGATGCTCCTGGTCAGGTGGGATGCCCTCCTTGTGTTGGATTTTAGCTTTG 10344 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || || || || | ||| ||||| || ||||| || || | || Sbjct 10343 ACATTCTCGATAGTGTCACTGGGCTCGATCTCAAGTGTGATGGTCTTGCCCGTCAAGGTC 10284 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 10283 TTCACAAAGATCTGCAT 10267 >seq15580 Length=3375 Score = 107 bits (118), Expect = 4e-18 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 269150 GCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGA 269209 ||||||||||| || ||||| ||||| |||||||| ||||| || ||||| ||||||||| Sbjct 3373 GCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATATTCTGGTTAAAGAAAAGA 3314 Query 269210 GGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAG 269261 || |||||||| || | ||||| || || ||| | || ||||| || |||| Sbjct 3313 GGTCTTATGCCTGGGCTCACTTTTTCCAATGAACTCATCAGCAGAGATGAAG 3262 >seq109872 Length=19372 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||| || ||||||||||| || ||| | | ||| || || || ||||| || Sbjct 16151 GTGGACTCTTTTTGCATATTATAGTCTGAGAGAATGCGACCATCCTCCAGCTGTTTGCCC 16210 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||||| || | || || ||||| || || ||||| | || || || || ||||| Sbjct 16211 GCAAAAAACAGACATTGCTGGTCAGGTGGGATGCCTTCCGTGTCTTGGATTTTAGCTTTG 16270 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || || || || || || ||||| |||| ||| |||| || | | || Sbjct 16271 ACATTCTCAGTAGTGTCACTGGGCTCGACCTCAAGTGCAATGGTCTAGCCCTTCGGGGTC 16330 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 16331 TTCACAAAGATCTGCAT 16347 >seq2401 Length=18371 Score = 104 bits (114), Expect = 5e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 ||||||| ||||||||||| || ||||| | || || || || ||||| || ||||||| Sbjct 334 CTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAAA 275 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | || | ||| || ||||| || || || || || | || | || ||||| ||||| | Sbjct 274 TCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTTTTGGAGTTTAGCTTTGACATTCT 215 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | || || | || | ||||| || || || ||||| || || || || || ||| Sbjct 214 CAATAGTGTCATTGGGCCCGACCTCAAGGGTGATGGTCTTGCCTGTTAGGGTCTTCACAC 155 Query 104550 ATATCTGCAT 104559 | |||||||| Sbjct 154 AGATCTGCAT 145 >seq113583 Length=22641 Score = 102 bits (112), Expect = 2e-16 Identities = 142/197 (72%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| ||||||||||| | ||||| || || || || || ||||| || Sbjct 17454 GTGGACTCTTTCTGGATATTATAGTCTG--AGAGTGCTGCCATCCTCCAGCTGTTTGCCC 17511 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||| |||| || | ||| || ||||| || || || || | || || || | ||||| Sbjct 17512 GCACAAATCAGACGCTGCTGCTCAGGCGGGATGCCCTCCTGGTCTTGGATTTGAGCTTTG 17571 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||| || || || || || || ||||| ||||| || ||||| || || || || Sbjct 17572 ACATGCTCAGTAGTGTCACTGGGCTCGACCTCGAGTGTGATGGTCTTGCCCGTCAGGGTC 17631 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 17632 TTCAC-AAGATCTGCAT 17647 >seq78565 Length=14118 Score = 102 bits (112), Expect = 2e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 104376 GAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCC 104435 |||| || |||||||| | || | || ||||| ||||| ||||||||||| || || Sbjct 283 GAATGTTGTAGTCAGACAAAGCGCGTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTT 342 Query 104436 TCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGG 104495 | || |||||| |||| |||||||| |||||||| ||| | || |||||||||||| | Sbjct 343 TTTGCTGATCAAGAGGAATTCCTTCCTTATCCTGGATCATGGCCCTTACATTTTCTATTG 402 Query 104496 TATC 104499 |||| Sbjct 403 TATC 406 >seq85480 Length=19824 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | | || ||||||||||| |||||||| || |||||||| || |||||||| Sbjct 17658 GGAGAACGTGTTGTAGCTTTTGCCGCAGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCA 17717 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || || ||| | |||||| |||| || ||||| || | || || || |||||| | Sbjct 17718 TCAATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAACGAACTT 17777 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 17778 ATTAGCAGAGATGA 17791 >seq123873 Length=8769 Score = 89.7 bits (98), Expect = 1e-12 Identities = 139/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| ||||||||||| || ||||| || || || || ||||| || Sbjct 301 GTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGTGGCCATCCTCCAGCTGTTTGCCT 242 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| || ||||| || || | | || || || || || ||||| Sbjct 241 GCAAAAATCAGACGCTGCTGGTCAGGCGGGATGC---CCTTGTCTTGGATTTTAGCTTTG 185 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || || || || || | ||||| ||||| || |||| | | || || Sbjct 184 ACATTCTCAGTAGTGTCACTGGGCTTGACCTCGAGTGTGATGTTCTTGTCTATCAGGGTC 125 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 124 TTCAC-AAGATCTGCAT 109 >seq88024 Length=2735 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 65771 AAACTCCTCCTTACCGAAATTAAATATTAATATTCCAACATTACCTCTATAGTCTGAATC 65830 ||||| || || || |||||||| | || | || | ||| ||||| || ||| || Sbjct 1931 AAACTTTTCTTTGCCAAAATTAAACAGTACAACACCCATATTTCCTCTGTAATCTTCGTC 1990 Query 65831 TATAACACCAGCACCTACATCTATAAAGTAATTATACGCTAATCCAGATCGGGGAGCTAT 65890 ||| |||||||| ||||||||||| |||| || || |||||||| || ||||||| Sbjct 1991 TATGACACCAGCTCCTACATCTATGAAGTGTTTTGTAGCCAATCCAGAACGTGGAGCTAC 2050 Query 65891 TCTACCATAATATCCTCTAGGAA 65913 ||| |||||| | || ||||| Sbjct 2051 TCTTCCATAACACCCAGAAGGAA 2073 >seq102344 Length=80592 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| |||||||| ||||| || ||||||||||||| ||||| ||||| ||||| Sbjct 71709 CCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCG 71768 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTT 104544 || || || ||||| |||||||| ||||| Sbjct 71769 AGGGTGATGGTCTTCCCAGTAAGGGTTTT 71797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149030657134000