Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq12448 172 1e-37
seq33159 168 2e-36
seq5492 168 2e-36
seq90327 145 2e-29
seq66463 132 1e-25
seq74389 107 4e-18
seq15580 107 4e-18
seq109872 104 5e-17
seq2401 104 5e-17
seq113583 102 2e-16
seq78565 102 2e-16
seq85480 98.7 2e-15
seq123873 89.7 1e-12
seq88024 87.8 4e-12
seq102344 84.2 5e-11
>seq12448
Length=17785
Score = 172 bits (190), Expect = 1e-37
Identities = 166/213 (78%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | || || || | ||||| || |||||||| | ||| | || |||||
Sbjct 3334 ACAAGATGAAGGGTGGACTCCTGTTGAATGTTTTAGTCAGACACAGTGCATCCATCTTCC 3393
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
||||| || || ||||| || || || || |||| |||||| |||||||||||||||||
Sbjct 3394 AGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGATTAGGAGGAATTCCTTCTTTATCCTGG 3453
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| |||||||||||||||| ||||| ||||| ||||| || || || |||||
Sbjct 3454 ATCTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTC 3513
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|||||||| ||||| || || |||||||| |||
Sbjct 3514 CCAGTAAGGGTTTTCACGAAAATCTGCATCTTG 3546
>seq33159
Length=15523
Score = 168 bits (186), Expect = 2e-36
Identities = 165/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | || || || || ||||| || |||||||| | ||| | || |||||
Sbjct 2110 ACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACACAGTGCATCCATCTTCC 2169
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
||||| || |||||||| || || || | |||||||||| ||| |||| ||||||||
Sbjct 2170 AGTTGCTTGCCAGCAAAGATCAGTCTTTACAGATCAGGAGGAATTTCTTCCTTATCCTGT 2229
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || ||||||||||||| ||||| ||||| ||||| || || || |||||
Sbjct 2230 ATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAACCTCGAGGGTGATGGTCTTC 2289
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|||||||| ||||| ||||| |||||||| |||
Sbjct 2290 CCAGTAAGGGTTTTCACAAAAATCTGCATCTTG 2322
>seq5492
Length=9153
Score = 168 bits (186), Expect = 2e-36
Identities = 165/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | || || || || ||||| || |||||||| | ||| | || |||||
Sbjct 3810 ACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCACCCATCTTCC 3751
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
|||| || |||||||| || || || || ||||||||||| |||||||| ||||||||
Sbjct 3750 CGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 3691
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || |||||||||||| ||||| ||||| ||||| || || || |||||
Sbjct 3690 ATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGTTCAACCTCGAGGGTGATGGTCTTC 3631
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|||||||| ||||| || || |||||||| |||
Sbjct 3630 CCAGTAAGGGTTTTCACGAAAATCTGCATCTTG 3598
>seq90327
Length=63722
Score = 145 bits (160), Expect = 2e-29
Identities = 158/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413
||||| | || || || || | ||| || |||||||| | || | || ||||| |||
Sbjct 54690 AGATGAAGAGTGGACTCCTTTTAAATGTTGTAGTCAGACAAGGTACATCCATCTTCCAGT 54631
Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473
|| || |||||||| | || || || ||||||||||| |||||||| |||||||| |||
Sbjct 54630 TGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATC 54571
Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533
|| ||||||||||||||| ||||| ||||| ||||| || || || ||||| ||
Sbjct 54570 TTGGCTTTTACATTTTCTCTTGTATCTGAGGGTTCAACCTCAAGAGTGATGGTCTTCCCG 54511
Query 104534 GTAAGTGTTTTTACAAATATCTGCATTTTG 104563
||| | |||| | || |||||||| |||
Sbjct 54510 GTATGGGTTTCCATGAAAATCTGCATCTTG 54481
>seq66463
Length=18175
Score = 132 bits (146), Expect = 1e-25
Identities = 123/155 (79%), Gaps = 1/155 (1%)
Strand=Plus/Minus
Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465
|||| ||||| || |||||||| | ||||| || ||| ||||||| |||||||||||||
Sbjct 9781 CTTCCAGTTGCTTGCCAGCAAAGCTCAGCCTTTGCTGAGCAGGAGGAATTCCTTCTTTAT 9722
Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525
|| | ||||| || ||||||||||||| ||||| ||||| |||| || || || |
Sbjct 9721 CCCGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAGCCTCCAGAGTGATGG 9662
Query 104526 -TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||| |||||||| ||||| || || ||||||||
Sbjct 9661 TTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCAT 9627
>seq74389
Length=16610
Score = 107 bits (118), Expect = 4e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || |||||||| ||||||||||| || ||||| | || || || | ||||| ||
Sbjct 10463 GTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTCCATCTGTTTGCCG 10404
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|||||||| || || || ||||| || || || || || | || || || |||||
Sbjct 10403 GCAAAAATCAGATGCTCCTGGTCAGGTGGGATGCCCTCCTTGTGTTGGATTTTAGCTTTG 10344
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | || || || || || | ||| ||||| || ||||| || || | ||
Sbjct 10343 ACATTCTCGATAGTGTCACTGGGCTCGATCTCAAGTGTGATGGTCTTGCCCGTCAAGGTC 10284
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||| ||||||||
Sbjct 10283 TTCACAAAGATCTGCAT 10267
>seq15580
Length=3375
Score = 107 bits (118), Expect = 4e-18
Identities = 91/112 (81%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 269150 GCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGA 269209
||||||||||| || ||||| ||||| |||||||| ||||| || ||||| |||||||||
Sbjct 3373 GCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATATTCTGGTTAAAGAAAAGA 3314
Query 269210 GGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAG 269261
|| |||||||| || | ||||| || || ||| | || ||||| || ||||
Sbjct 3313 GGTCTTATGCCTGGGCTCACTTTTTCCAATGAACTCATCAGCAGAGATGAAG 3262
>seq109872
Length=19372
Score = 104 bits (114), Expect = 5e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || ||||| || ||||||||||| || ||| | | ||| || || || ||||| ||
Sbjct 16151 GTGGACTCTTTTTGCATATTATAGTCTGAGAGAATGCGACCATCCTCCAGCTGTTTGCCC 16210
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||||| || | || || ||||| || || ||||| | || || || || |||||
Sbjct 16211 GCAAAAAACAGACATTGCTGGTCAGGTGGGATGCCTTCCGTGTCTTGGATTTTAGCTTTG 16270
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || || || || || || ||||| |||| ||| |||| || | | ||
Sbjct 16271 ACATTCTCAGTAGTGTCACTGGGCTCGACCTCAAGTGCAATGGTCTAGCCCTTCGGGGTC 16330
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||| ||||||||
Sbjct 16331 TTCACAAAGATCTGCAT 16347
>seq2401
Length=18371
Score = 104 bits (114), Expect = 5e-17
Identities = 137/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429
||||||| ||||||||||| || ||||| | || || || || ||||| || |||||||
Sbjct 334 CTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAAA 275
Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489
| || | ||| || ||||| || || || || || | || | || ||||| ||||| |
Sbjct 274 TCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTTTTGGAGTTTAGCTTTGACATTCT 215
Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549
| | || || | || | ||||| || || || ||||| || || || || || |||
Sbjct 214 CAATAGTGTCATTGGGCCCGACCTCAAGGGTGATGGTCTTGCCTGTTAGGGTCTTCACAC 155
Query 104550 ATATCTGCAT 104559
| ||||||||
Sbjct 154 AGATCTGCAT 145
>seq113583
Length=22641
Score = 102 bits (112), Expect = 2e-16
Identities = 142/197 (72%), Gaps = 3/197 (2%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || |||||||| ||||||||||| | ||||| || || || || || ||||| ||
Sbjct 17454 GTGGACTCTTTCTGGATATTATAGTCTG--AGAGTGCTGCCATCCTCCAGCTGTTTGCCC 17511
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||| |||| || | ||| || ||||| || || || || | || || || | |||||
Sbjct 17512 GCACAAATCAGACGCTGCTGCTCAGGCGGGATGCCCTCCTGGTCTTGGATTTGAGCTTTG 17571
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|||| || || || || || || ||||| ||||| || ||||| || || || ||
Sbjct 17572 ACATGCTCAGTAGTGTCACTGGGCTCGACCTCGAGTGTGATGGTCTTGCCCGTCAGGGTC 17631
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 17632 TTCAC-AAGATCTGCAT 17647
>seq78565
Length=14118
Score = 102 bits (112), Expect = 2e-16
Identities = 97/124 (78%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 104376 GAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCC 104435
|||| || |||||||| | || | || ||||| ||||| ||||||||||| || ||
Sbjct 283 GAATGTTGTAGTCAGACAAAGCGCGTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTT 342
Query 104436 TCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGG 104495
| || |||||| |||| |||||||| |||||||| ||| | || |||||||||||| |
Sbjct 343 TTTGCTGATCAAGAGGAATTCCTTCCTTATCCTGGATCATGGCCCTTACATTTTCTATTG 402
Query 104496 TATC 104499
||||
Sbjct 403 TATC 406
>seq85480
Length=19824
Score = 98.7 bits (108), Expect = 2e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
|||||| | | || ||||||||||| |||||||| || |||||||| || ||||||||
Sbjct 17658 GGAGAACGTGTTGTAGCTTTTGCCGCAGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCA 17717
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
| || || ||| | |||||| |||| || ||||| || | || || || |||||| |
Sbjct 17718 TCAATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAACGAACTT 17777
Query 269246 ATAAGCAGGGACGA 269259
|| ||||| || ||
Sbjct 17778 ATTAGCAGAGATGA 17791
>seq123873
Length=8769
Score = 89.7 bits (98), Expect = 1e-12
Identities = 139/197 (71%), Gaps = 4/197 (2%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || |||||||| ||||||||||| || ||||| || || || || ||||| ||
Sbjct 301 GTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGTGGCCATCCTCCAGCTGTTTGCCT 242
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|||||||| || | ||| || ||||| || || | | || || || || || |||||
Sbjct 241 GCAAAAATCAGACGCTGCTGGTCAGGCGGGATGC---CCTTGTCTTGGATTTTAGCTTTG 185
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || || || || || | ||||| ||||| || |||| | | || ||
Sbjct 184 ACATTCTCAGTAGTGTCACTGGGCTTGACCTCGAGTGTGATGTTCTTGTCTATCAGGGTC 125
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 124 TTCAC-AAGATCTGCAT 109
>seq88024
Length=2735
Score = 87.8 bits (96), Expect = 4e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 65771 AAACTCCTCCTTACCGAAATTAAATATTAATATTCCAACATTACCTCTATAGTCTGAATC 65830
||||| || || || |||||||| | || | || | ||| ||||| || ||| ||
Sbjct 1931 AAACTTTTCTTTGCCAAAATTAAACAGTACAACACCCATATTTCCTCTGTAATCTTCGTC 1990
Query 65831 TATAACACCAGCACCTACATCTATAAAGTAATTATACGCTAATCCAGATCGGGGAGCTAT 65890
||| |||||||| ||||||||||| |||| || || |||||||| || |||||||
Sbjct 1991 TATGACACCAGCTCCTACATCTATGAAGTGTTTTGTAGCCAATCCAGAACGTGGAGCTAC 2050
Query 65891 TCTACCATAATATCCTCTAGGAA 65913
||| |||||| | || |||||
Sbjct 2051 TCTTCCATAACACCCAGAAGGAA 2073
>seq102344
Length=80592
Score = 84.2 bits (92), Expect = 5e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515
||||| |||||||| ||||| || ||||||||||||| ||||| ||||| |||||
Sbjct 71709 CCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCG 71768
Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTT 104544
|| || || ||||| |||||||| |||||
Sbjct 71769 AGGGTGATGGTCTTCCCAGTAAGGGTTTT 71797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1149030657134000
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