Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_006146.1
Length=171096
Score E
Sequences producing significant alignments: (Bits) Value
seq75380 116 4e-21
>seq75380
Length=28474
Score = 116 bits (128), Expect = 4e-21
Identities = 109/139 (78%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199
|||| |||||||| || || ||| |||| || ||||||||||||||| ||||||| || |
Sbjct 11050 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACTTGGAGGAGGTGA 11109
Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259
|||| |||||||| | ||||||| | ||| ||||||||||||| || || || |
Sbjct 11110 TGCCCCAGGCTGAGAGCGAGGACCCAGAGATCAAGAAGCACGTGAACTCCCTCGGGGAAA 11169
Query 10260 ATCTAAAGACCCTAAGGCT 10278
| || ||||| || |||||
Sbjct 11170 ACCTGAAGACGCTCAGGCT 11188
Score = 84.2 bits (92), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418
|||| || || ||||| |||||||||||||||||||| || || || || || ||||| |
Sbjct 13308 AGCTCCAAGAGAAAGGGGTCTACAAAGCCATGAGTGAGTTCGATATCTTCATCAACTACA 13367
Query 10419 TAGAAGCATACATGAC 10434
||||||| ||||||||
Sbjct 13368 TAGAAGCCTACATGAC 13383
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546281020480000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |