Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq75380 116 4e-21 >seq75380 Length=28474 Score = 116 bits (128), Expect = 4e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| |||| || ||||||||||||||| ||||||| || | Sbjct 11050 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACTTGGAGGAGGTGA 11109 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| |||||||| | ||||||| | ||| ||||||||||||| || || || | Sbjct 11110 TGCCCCAGGCTGAGAGCGAGGACCCAGAGATCAAGAAGCACGTGAACTCCCTCGGGGAAA 11169 Query 10260 ATCTAAAGACCCTAAGGCT 10278 | || ||||| || ||||| Sbjct 11170 ACCTGAAGACGCTCAGGCT 11188 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| |||||||||||||||||||| || || || || || ||||| | Sbjct 13308 AGCTCCAAGAGAAAGGGGTCTACAAAGCCATGAGTGAGTTCGATATCTTCATCAACTACA 13367 Query 10419 TAGAAGCATACATGAC 10434 ||||||| |||||||| Sbjct 13368 TAGAAGCCTACATGAC 13383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546281020480000