Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq111647 183 4e-41 seq83614 95.1 2e-14 >seq111647 Length=10039 Score = 183 bits (202), Expect = 4e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| | |||||| |||||||||||| ||| |||| || ||||| |||||| Sbjct 4572 GTCTGGAACAACCGCTCGTCATCCCATTCTGGATGCTCTTGTTTAAGCACATCACACACT 4513 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||| ||||| | |||||| || || || |||||||| |||||||||||||| ||||| Sbjct 4512 CTGTTATGTTCTCGGAGCCAAATCGTGGCATACATCATCAGACCAGGCACCAGACCAAAC 4453 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | |||| | ||| || || | || ||||||||||| | | Sbjct 4452 ACCTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGGACATGAGGGGGATAGATCATCTCC 4393 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| ||||||||| | ||| ||||||| || || ||||| |||| Sbjct 4392 ACCTGAGTATCTTTGACTGTGGGAGGATACACCTCTCCATCAATTATCT 4344 Score = 152 bits (168), Expect = 7e-32 Identities = 204/284 (72%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||| |||| |||||| | |||| ||||||||||| | ||| | |||| ||| | Sbjct 6122 GGACAGCCTTGCACGTTGTTGCAGATGAGAGACTGGATTGAGGCAGTGTTGATGATTTTA 6063 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || || || ||||| || || ||||| ||||||||||| || || || || || Sbjct 6062 AAACCTACTTCTCCACCAAAAGTGCTCGGTTTCCAGTAGTTAGGAGAACATATAGGATTG 6003 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 |||| || ||||| | ||| || || || || || || | ||| ||||||| |||||| Sbjct 6002 CCCATCAGTCCTTTCAAGGAGAAAGGTGCGCCAAGTTCTACCATGGTCTCACCAAAGATG 5943 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 || | | ||| |||||||| ||||| | | | |||| ||||| || |||||||| Sbjct 5942 GCATCTGCACGTGGCTTTTCTACCAAAAGGGCAGGATACAGCTCCATGGCATCGATGTCA 5883 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 || || ||||| | || ||||| |||||||| |||||||| Sbjct 5882 CCATAGAGGGCTTCTAACTCTGCAGCCATTTCCTTCTCTCCTGT 5839 Score = 125 bits (138), Expect = 1e-23 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 3468 TCTTACCCCATGACCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTGTGATCTGTCTTGAA 3409 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| |||| || |||||||| || || |||||||||||||| Sbjct 3408 AAACTGATGGGTGAAGTGCTGGGCAAAGAACGCAAACATCAAATTTGTGCCCTGGGGATC 3349 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 || | || ||| |||||| ||||||||||| | | ||| || || | Sbjct 3348 AGGGATAAACTGTTTCCTTAGAAGAAATTTTTCCACAATCAATTTTGAATCAGGAAGCTC 3289 Query 10208 ttttttACCTGGTGAACGAGAA 10229 ||| || |||| |||||||| Sbjct 3288 TTTCTTTCCTGAAAAACGAGAA 3267 Score = 100 bits (110), Expect = 4e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | ||||| || || |||| || || ||||| ||| || | | Sbjct 2979 TCACCTTTCACGCCCATGGGAGTGGGGCAGTCGTCAGCCACAGGAGGAAGAGCTCTGGTG 2920 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 |||||||||| ||| || || |||||||||||| || | || | || |||||| | Sbjct 2919 TAATAGGAGATATTAGAAAAGGCTTCCCAGCTTTTATAGCCATACTGTGCATTGTAGGTT 2860 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || |||||||||||||||| ||||| ||||| Sbjct 2859 GGCGGGCTGTCAATCAAATGTGATCTGGCTGAA 2827 Score = 87.8 bits (96), Expect = 3e-12 Identities = 184/267 (69%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| | |||| ||||| || | |||||||| || || | Sbjct 5191 CTTACCCTGCCAGCAATTTGCCTGCTGAATGATTCAACAAACTGGGTAAGCCCATGTTCC 5132 Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTTAATGTAGTCATACTT-TGTTTTATCAATC 9438 || | ||| || |||||||| | ||| || ||| || |||| || | | ||||| Sbjct 5131 ATTAATATAGAGTTGTTGTAGAGGAACTGTCGATG--GTTGTACTCCTGGTCT-TCAATT 5075 Query 9439 TCAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9498 | ||| | || |||| || | ||||||||| || | | |||||||||| | | || Sbjct 5074 TGAAAGGTGTCAGGCAGCAGGGGATGCCAGTGGTAGAGCGTGTTAAACTCAGCAGCAATG 5015 Query 9499 CGATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAA 9557 || |||||||||||||| | | ||| ||||| || || | |||| || | || Sbjct 5014 CGGTTTTGGTACTGGAATTGTTGGTGGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAA 4956 Query 9558 GTGGTAGCCGCTGAGCTGCTGAACATA 9584 ||| ||||| || | ||||| || || Sbjct 4955 GTGATAGCCACTCAAGTGCTGTACGTA 4929 >seq83614 Length=40960 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || |||| || || || || ||||| | ||||| || | || || |||||| ||| Sbjct 25130 AAGCCCATCTCGCCACCAAATGTGCTCGACTTCCAATATTCAGGAGAACAGATGGGATTC 25071 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | |||||| ||||||||||| |||||||| | || | || ||||| || || ||| Sbjct 25070 CCTAAGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATACTCTCCCCAAAAATG 25011 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | ||| ||| || ||| || | | | ||| | ||| ||||||| || || |||||| Sbjct 25010 GAGTTTGGATGGCACTTCTCAAGAAGCAGTCCCGGGTAGAACTCCAAGGCATCAATGTCT 24951 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || || || || | || || || || |||| |||||| Sbjct 24950 CCATATAGCTCCTCCAACTCAGCTGCCATCTCCTCCTCTCCT 24909 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 10086 || |||||||| |||| | || |||||| | || || || |||| | ||| | | Sbjct 15533 CTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 15476 Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146 | |||||||| || || ||||| |||| ||||||||||| | ||||||||| || || | Sbjct 15475 AGAACTGGTGAGTAAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGTGGGT 15416 Query 10147 CGGGAGTGAAGGTCCTCC 10164 |||| ||||| |||||| Sbjct 15415 CGGGTGTGAACTTCCTCC 15398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707103322120000