Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq63810 116 3e-21 seq104951 102 7e-17 seq33159 102 7e-17 seq12448 96.9 3e-15 seq5492 96.9 3e-15 seq74389 95.1 1e-14 seq2401 95.1 1e-14 seq113583 87.8 2e-12 seq89363 87.8 2e-12 seq52881 82.4 7e-11 >seq63810 Length=35167 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | |||| ||||| ||| || ||||| || | ||| || ||| | Sbjct 27459 CCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27518 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| ||| ||||||||||| ||| ||||||| || | ||||| || || || Sbjct 27519 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGG 27578 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | || || |||||||| ||| |||||| | | || || Sbjct 27579 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 27638 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || | || ||||| ||||||||||||| Sbjct 27639 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATGC 27687 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | |||| ||||| ||| || ||||| || | ||| || ||| | Sbjct 27915 CCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 27974 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| ||| ||||||||||| ||| ||||||| || | ||||| || || || Sbjct 27975 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGG 28034 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | || || |||||||| ||| |||||| | | || || Sbjct 28035 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 28094 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || | || ||||||||||||||||| Sbjct 28095 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 28141 Score = 113 bits (124), Expect = 4e-20 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94770 AATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGT 94829 || || | || ||||| ||||| |||| |||| |||| ||| || ||||| || | || Sbjct 27220 AACTTAATACACCTCCCCTCAAGCGCAGGACCAGATGCAGAGTGGACTCCTTCTGGATGT 27279 Query 94830 TATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889 | || ||| || |||| ||| ||||||||||| ||| ||||||| || || |||| Sbjct 27280 TGTAGTCGGACAGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCT 27339 Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949 | || || || | || |||||||| | || || |||||||| ||| |||||| Sbjct 27340 GGTCAGGGGGGCTGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAC 27399 Query 94950 CGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | | || || || | ||||||| | || || || ||||| ||||||||||||| Sbjct 27400 TGGGCTCCACCTCCAGGGTGATGGACTGACCGGTCGAGGTCTTCACGAAGATCTGCATGC 27459 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | |||| ||||| ||| || || || || | ||| || ||| | Sbjct 27687 CCCCCTCTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 27746 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| ||| ||||||||||| ||| ||||||| || | ||||| || || || Sbjct 27747 AGAGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGG 27806 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | || || |||||||| ||| |||||| | | || || Sbjct 27807 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 27866 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || | || ||||| ||||||||||||| Sbjct 27867 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATGC 27915 >seq104951 Length=12537 Score = 102 bits (112), Expect = 7e-17 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||||| ||| || || || | | |||||| || | |||| | |||||| Sbjct 11033 CACCAAGTGCAGAGTGGACTCTTTCTCGATGTTATAGTCTGAGAGAGTGCGGCCATCCTC 11092 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||||||| || |||| || | | ||||| || || || || || || ||||| | Sbjct 11093 CAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 11152 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA-CGTCAATCGTGATGGTTT 94976 ||||| || |||||| | | ||||||| | | |||| | | | |||||||| | Sbjct 11153 GATTTTGGCTTTGACGTTTTCAATAGTGTCACTGGGCTCGACCTTTGAGTGTGATGGTCT 11212 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || |||||| ||||||||||||| Sbjct 11213 TGCCTGTCAGGGTTTTCCCAAAGATCTGCAT 11243 >seq33159 Length=15523 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | ||| || |||||||| | ||| || || || |||| Sbjct 2103 TCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACACAGTGCATCC 2162 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| || || || ||||||| | ||||| | |||| |||||||| |||| || Sbjct 2163 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTACAGATCAGGAGGAATTTCTTCCTT 2222 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | || || | | | || || || | ||||| Sbjct 2223 ATCCTGTATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAACCTCGAGGGTGAT 2282 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || |||||||| ||||||||||| |||||||| Sbjct 2283 GGTCTTCCCAGTAAGGGTTTTCACAAAAATCTGCAT 2318 >seq12448 Length=17785 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | || || |||| ||| | ||| || || || |||| Sbjct 3327 TCTCAACACAAGATGAAGGGTGGACTCCTGTTGAATGTTTTAGTCAGACACAGTGCATCC 3386 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| || || || ||||||| | ||||||||||| |||||||| |||||||| Sbjct 3387 ATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGATTAGGAGGAATTCCTTCTTT 3446 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || || || || | | || || | | | || || || | ||||| Sbjct 3447 ATCCTGGATCTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGAT 3506 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || |||||||| |||||||| || |||||||| Sbjct 3507 GGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCAT 3542 >seq5492 Length=9153 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | ||| || |||||||| | ||| || || || |||| Sbjct 3817 TCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCACCC 3758 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||| | || || || ||||||| | |||||||||||| |||||||| ||||| || Sbjct 3757 ATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 3698 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | || || | | || || || | ||||| Sbjct 3697 ATCCTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGTTCAACCTCGAGGGTGAT 3638 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || |||||||| |||||||| || |||||||| Sbjct 3637 GGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCAT 3602 >seq74389 Length=16610 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||||| ||| || || || || | ||||| || | |||| | |||||| Sbjct 10476 CACCAAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTC 10417 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || |||||| ||| |||| || | | ||| || || || || || || |||| | Sbjct 10416 CATCTGTTTGCCGGCAAAAATCAGATGCTCCTGGTCAGGTGGGATGCCCTCCTTGTGTTG 10357 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||| || ||||| ||| ||||||| | | |||| |||| |||||||| || Sbjct 10356 GATTTTAGCTTTGACATTCTCGATAGTGTCACTGGGCTCGATCTCAAGTGTGATGGTCTT 10297 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | || ||||||||||||||||| Sbjct 10296 GCCCGTCAAGGTCTTCACAAAGATCTGCAT 10267 >seq2401 Length=18371 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||||| ||| || | || || | ||||| || | |||| | |||||| Sbjct 354 CACCAAGTGCAGAGTGGACGCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTC 295 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||||||| || |||| || | | ||||| || || || ||||| || |||| | Sbjct 294 CAGCTGTTTGCCTGCAAAAATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTTTTG 235 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 | ||| || ||||| | | ||||||| | | |||| |||| |||||||| || Sbjct 234 GAGTTTAGCTTTGACATTCTCAATAGTGTCATTGGGCCCGACCTCAAGGGTGATGGTCTT 175 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || |||||| |||||||||| Sbjct 174 GCCTGTTAGGGTCTTCACACAGATCTGCAT 145 >seq113583 Length=22641 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/211 (71%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||||| || || || || || | ||||| || | | |||| || |||||| Sbjct 17441 CACCAAGTGCACGGTGGACTCTTTCTGGATATTATAGTC--TGAGAGTGCTGCCATCCTC 17498 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||||||| || || | || | | ||||| || || || || || || | ||| | Sbjct 17499 CAGCTGTTTGCCCGCACAAATCAGACGCTGCTGCTCAGGCGGGATGCCCTCCTGGTCTTG 17558 Query 94918 AATTTTTGCCTTGAC-GGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||| || ||||| || | | ||||||| | | ||||| || | |||||||| | Sbjct 17559 GATTTGAGCTTTGACATGCTCAG-TAGTGTCACTGGGCTCGACCTCGAGTGTGATGGTCT 17617 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || || ||||| ||||||||||| Sbjct 17618 TGCCCGTCAGGGTCTTCAC-AAGATCTGCAT 17647 >seq89363 Length=18264 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/208 (70%), Gaps = 5/208 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||||| ||| || || || || | |||||||| | | || || | |||||| Sbjct 15791 CACCAAGTGCAGAGTGGACTCTTTCTGGATATTATAATC--TAAGAGAGTGGCCATCCTC 15848 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||||||| || |||| | | || ||||| || | || || || || ||||| | Sbjct 15849 CAGCTGTTTGCCCTCAAAAAGCAGTCGCTGCTGGTCAGATGGGATGCCCTCCTTGTCTTG 15908 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||| || |||||| | |||||| | | ||||| || | || ||||| || Sbjct 15909 GATTTTAGCGTTGACGTTCTCAGTGGTGTCACTGGGCTCGACCTCGA--GT-ATGGTCTT 15965 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | || || ||||||||||||||| Sbjct 15966 GCCCATCAGGGTCTTCACAAAGATCTGC 15993 >seq52881 Length=22932 Score = 82.4 bits (90), Expect = 7e-11 Identities = 120/166 (72%), Gaps = 3/166 (2%) Strand=Plus/Minus Query 94843 AGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTA-ATCTTTGCTGATCTGGAGGAA 94901 ||||| | ||||||||||||||| || |||| || | || || ||| || || ||| Sbjct 19871 AGTGTGGCCATCCTCCAGCTGTTTGCCCACAAAAATCAGATGCTT-CTGGTCAGGGGGA- 19814 Query 94902 TACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGT 94961 | || |||||||| | ||||| || ||||| | ||||||| | | | ||| | Sbjct 19813 TGCCCTCTTTGTCTTGGATTTTAGCTTTGACATTCTAAATAGTGTCACTGGGCTTGACCT 19754 Query 94962 CAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| |||||||| || || || || | ||||||||||||||||| Sbjct 19753 CAAGTGTGATGGTCTTGCCTGTCAGGCTCTTCACAAAGATCTGCAT 19708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447391815780000