Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq109894 149 1e-31 seq48384 141 1e-29 seq41022 127 3e-25 seq74443 118 2e-22 >seq109894 Length=7069 Score = 149 bits (164), Expect = 1e-31 Identities = 181/244 (74%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 1303 CGCCAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 1245 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || ||||| || |||||||| ||||||| | |||| ||||||| Sbjct 1244 TCCGGCGCCTGGCCCGGCGTGGCGGCGTCAAGCGCATCTCTGGTCTCATCTACGAAGAGA 1185 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || ||||| | ||||| ||| || |||| || ||| || ||| || | Sbjct 1184 CTCGCGGGGTGCTGAAGGTATTCCTGGAGAATGTGATCCGAGACGCTGTCACCTACACAG 1125 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| | ||||| | ||||| || | || ||||| | Sbjct 1124 AGCACGCCAAGCGCAAGACAGTCACCGCTATGGACGTTGTCTACGCGCTCAAGCGTCAGG 1065 Query 16671 GCCG 16674 | || Sbjct 1064 GTCG 1061 >seq48384 Length=27388 Score = 141 bits (156), Expect = 1e-29 Identities = 190/262 (73%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 5515 CGCTAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 5457 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | ||||| ||||| || ||||| || || ||||| |||| || | | || || |||| Sbjct 5456 TTCGTCGCCTGGCCCGGCGTGGCGGCGTAAAGCGAATCTCGGGGCTCATTTACGAGGAGA 5397 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| | || || ||| ||| |||| || ||| || ||| || | Sbjct 5396 CCCGCGGGGTGCTGAAGGTGTTTCTGGAGAACGTGATCCGGGACGCTGTCACCTACACGG 5337 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| ||||||| | ||||| || | || || || | Sbjct 5336 AGCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 5277 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||||| | || ||||| || Sbjct 5276 GCCGTACTCTGTACGGTTTCGG 5255 >seq41022 Length=62168 Score = 127 bits (140), Expect = 3e-25 Identities = 187/262 (71%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 58339 CGCCAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGTATCACCAAGCCCGCCA 58397 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 58398 TCCGGCGCCTGGCCCGACGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGA 58457 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| | || || ||| ||| |||| || || || ||| || | Sbjct 58458 CCCGCGGGGTGCTGAAGGTGTTTCTGGAGAACGTGATCCGAGACGCCGTCACCTACACGG 58517 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | ||||| || | || || || | Sbjct 58518 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 58577 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | | || ||||| || Sbjct 58578 GCCGCACCCTCTACGGTTTCGG 58599 Score = 113 bits (124), Expect = 7e-21 Identities = 179/254 (70%), Gaps = 12/254 (5%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 780 CGCCAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 722 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || || |||||||| |||| || | ||||||| |||| Sbjct 721 TCCGGCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTATGAGGAGA 662 Query 16551 TTC-----GTGAT-----GTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTC 16600 | ||| | || |||| | || || ||| ||| |||| || || || Sbjct 661 CCCGCGGGGTGCTCAAGGGTGCGGAAGGTGTTTCTGGAGAACGTGATCCGAGACGCCGTC 602 Query 16601 CACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTG 16660 ||| || |||||||| || || ||||| |||||| ||||||| | ||||| || | Sbjct 601 ACCTACACGGAGCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTC 542 Query 16661 AAACGTCAAGGCCG 16674 || || || ||||| Sbjct 541 AAGCGCCAGGGCCG 528 >seq74443 Length=12709 Score = 118 bits (130), Expect = 2e-22 Identities = 185/262 (71%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 5350 CGCGAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 5408 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || || |||| || || || || |||||||| |||| || | |||| || |||| Sbjct 5409 TACGGCGCTTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGA 5468 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| | ||||| ||| ||| |||| || || || || || | Sbjct 5469 CCCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACTTACACGG 5528 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| | ||||| | ||||| || | || || || | Sbjct 5529 AGCACGCCAAGCGCAAGACGGTCACGGCAATGGACGTGGTCTACGCGCTCAAGCGCCAGG 5588 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | | |||||||| || Sbjct 5589 GCCGAACCCTGTATGGTTTCGG 5610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78928453726500