Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq109894 149 1e-31
seq48384 141 1e-29
seq41022 127 3e-25
seq74443 118 2e-22
>seq109894
Length=7069
Score = 149 bits (164), Expect = 1e-31
Identities = 181/244 (74%), Gaps = 2/244 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || |||| | || || || || |||||||| || ||||||||||| || |
Sbjct 1303 CGCCAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 1245
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || ||||| || ||||| || |||||||| ||||||| | |||| |||||||
Sbjct 1244 TCCGGCGCCTGGCCCGGCGTGGCGGCGTCAAGCGCATCTCTGGTCTCATCTACGAAGAGA 1185
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
||| | || ||||| | ||||| ||| || |||| || ||| || ||| || |
Sbjct 1184 CTCGCGGGGTGCTGAAGGTATTCCTGGAGAATGTGATCCGAGACGCTGTCACCTACACAG 1125
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| |||||| | ||||| | ||||| || | || ||||| |
Sbjct 1124 AGCACGCCAAGCGCAAGACAGTCACCGCTATGGACGTTGTCTACGCGCTCAAGCGTCAGG 1065
Query 16671 GCCG 16674
| ||
Sbjct 1064 GTCG 1061
>seq48384
Length=27388
Score = 141 bits (156), Expect = 1e-29
Identities = 190/262 (73%), Gaps = 2/262 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||||||||| || |||| | || || || || |||||||| || ||||||||||| || |
Sbjct 5515 CGCTAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 5457
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
| ||||| ||||| || ||||| || || ||||| |||| || | | || || ||||
Sbjct 5456 TTCGTCGCCTGGCCCGGCGTGGCGGCGTAAAGCGAATCTCGGGGCTCATTTACGAGGAGA 5397
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | || ||||| | || || ||| ||| |||| || ||| || ||| || |
Sbjct 5396 CCCGCGGGGTGCTGAAGGTGTTTCTGGAGAACGTGATCCGGGACGCTGTCACCTACACGG 5337
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| |||||| ||||||| | ||||| || | || || || |
Sbjct 5336 AGCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 5277
Query 16671 GCCGTAAGATTTATGGTTTTGG 16692
|||||| | || ||||| ||
Sbjct 5276 GCCGTACTCTGTACGGTTTCGG 5255
>seq41022
Length=62168
Score = 127 bits (140), Expect = 3e-25
Identities = 187/262 (71%), Gaps = 2/262 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || |||| | || || || || |||||||| || ||||||||||| || |
Sbjct 58339 CGCCAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGTATCACCAAGCCCGCCA 58397
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 58398 TCCGGCGCCTGGCCCGACGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGA 58457
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | || ||||| | || || ||| ||| |||| || || || ||| || |
Sbjct 58458 CCCGCGGGGTGCTGAAGGTGTTTCTGGAGAACGTGATCCGAGACGCCGTCACCTACACGG 58517
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| ||||| ||||||| | ||||| || | || || || |
Sbjct 58518 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 58577
Query 16671 GCCGTAAGATTTATGGTTTTGG 16692
|||| | | || ||||| ||
Sbjct 58578 GCCGCACCCTCTACGGTTTCGG 58599
Score = 113 bits (124), Expect = 7e-21
Identities = 179/254 (70%), Gaps = 12/254 (5%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || |||| | || || || || |||||||| || ||||||||||| || |
Sbjct 780 CGCCAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 722
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || ||||| || || || || |||||||| |||| || | ||||||| ||||
Sbjct 721 TCCGGCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTATGAGGAGA 662
Query 16551 TTC-----GTGAT-----GTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTC 16600
| ||| | || |||| | || || ||| ||| |||| || || ||
Sbjct 661 CCCGCGGGGTGCTCAAGGGTGCGGAAGGTGTTTCTGGAGAACGTGATCCGAGACGCCGTC 602
Query 16601 CACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTG 16660
||| || |||||||| || || ||||| |||||| ||||||| | ||||| || |
Sbjct 601 ACCTACACGGAGCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTC 542
Query 16661 AAACGTCAAGGCCG 16674
|| || || |||||
Sbjct 541 AAGCGCCAGGGCCG 528
>seq74443
Length=12709
Score = 118 bits (130), Expect = 2e-22
Identities = 185/262 (71%), Gaps = 2/262 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || |||| | || || || || |||||||| || ||||||||||| || |
Sbjct 5350 CGCGAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 5408
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
| || || |||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 5409 TACGGCGCTTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGA 5468
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | || ||||| | ||||| ||| ||| |||| || || || || || |
Sbjct 5469 CCCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACTTACACGG 5528
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| ||||| | ||||| | ||||| || | || || || |
Sbjct 5529 AGCACGCCAAGCGCAAGACGGTCACGGCAATGGACGTGGTCTACGCGCTCAAGCGCCAGG 5588
Query 16671 GCCGTAAGATTTATGGTTTTGG 16692
|||| | | |||||||| ||
Sbjct 5589 GCCGAACCCTGTATGGTTTCGG 5610
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 78928453726500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |