Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq82175 89.7 5e-13
seq71584 89.7 5e-13
>seq82175
Length=13617
Score = 89.7 bits (98), Expect = 5e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185
|||||||||| ||||| || | ||| ||||||||| ||| || ||| | | | |
Sbjct 979 TTTAAAAATCTGCATCCAAGGTGAACACATTATCTGTGGTTTCTGCCATTACTGCAAAAC 920
Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245
||||| || ||||| ||| || || |||||||| || ||||| || || || ||
Sbjct 919 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 860
Query 21246 CCATAAAATCAAATGGATTTTC 21267
||||||||||||| ||||||||
Sbjct 859 CCATAAAATCAAAGGGATTTTC 838
>seq71584
Length=60594
Score = 89.7 bits (98), Expect = 5e-13
Identities = 143/199 (72%), Gaps = 5/199 (3%)
Strand=Plus/Minus
Query 145456 GAATATAAAAGAGACCCTAAAAAGATG-CATAATGGAACCATAGAATTTACTAGCATCGA 145514
||||||||| |||||| | ||| ||| || |||| || | ||||| || ||||||||
Sbjct 40221 GAATATAAAGAAGACCCCAGAAA-ATGTCACGATGGCACTCTTGAATTCACCAGCATCGA 40163
Query 145515 TATGCATCGTGGAGCATGCCCTTCTAGGCGAGGAGATTTAGAAATATTGGGTTATTGTAT 145574
||| ||| | ||| || || || || || || |||||| | |||||||||||
Sbjct 40162 CGCGCACAATGGCGTGGCCCCATCGAGACGCGGTGACTTGGAAATACTCGGTTATTGTAT 40103
Query 145575 GATT-ACTTGGTTAGGTGGTAAATTACCATGGGAGGATAATTTAAAAAATTGTAATTATG 145633
|||| | | | |||| | | || || |||||||||||||| ||| || ||| ||||
Sbjct 40102 GATTCAGTGGCTTAGCCGCCATCTT-CCTTGGGAGGATAATTTGAAAGATCCTAAGTATG 40044
Query 145634 TAATGAATTCAAAAGTAGA 145652
| | || | ||||| ||||
Sbjct 40043 TTA-GATTCCAAAATTAGA 40026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 530833674020000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |