Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq82175 89.7 5e-13 seq71584 89.7 5e-13 >seq82175 Length=13617 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| ||||| || | ||| ||||||||| ||| || ||| | | | | Sbjct 979 TTTAAAAATCTGCATCCAAGGTGAACACATTATCTGTGGTTTCTGCCATTACTGCAAAAC 920 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| ||| || || |||||||| || ||||| || || || || Sbjct 919 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 860 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 859 CCATAAAATCAAAGGGATTTTC 838 >seq71584 Length=60594 Score = 89.7 bits (98), Expect = 5e-13 Identities = 143/199 (72%), Gaps = 5/199 (3%) Strand=Plus/Minus Query 145456 GAATATAAAAGAGACCCTAAAAAGATG-CATAATGGAACCATAGAATTTACTAGCATCGA 145514 ||||||||| |||||| | ||| ||| || |||| || | ||||| || |||||||| Sbjct 40221 GAATATAAAGAAGACCCCAGAAA-ATGTCACGATGGCACTCTTGAATTCACCAGCATCGA 40163 Query 145515 TATGCATCGTGGAGCATGCCCTTCTAGGCGAGGAGATTTAGAAATATTGGGTTATTGTAT 145574 ||| ||| | ||| || || || || || || |||||| | ||||||||||| Sbjct 40162 CGCGCACAATGGCGTGGCCCCATCGAGACGCGGTGACTTGGAAATACTCGGTTATTGTAT 40103 Query 145575 GATT-ACTTGGTTAGGTGGTAAATTACCATGGGAGGATAATTTAAAAAATTGTAATTATG 145633 |||| | | | |||| | | || || |||||||||||||| ||| || ||| |||| Sbjct 40102 GATTCAGTGGCTTAGCCGCCATCTT-CCTTGGGAGGATAATTTGAAAGATCCTAAGTATG 40044 Query 145634 TAATGAATTCAAAAGTAGA 145652 | | || | ||||| |||| Sbjct 40043 TTA-GATTCCAAAATTAGA 40026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530833674020000