Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq124007 96.9 9e-15
seq85480 87.8 5e-12
>seq124007
Length=20016
Score = 96.9 bits (106), Expect = 9e-15
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170
|| ||| |||| |||| ||||||||| || ||||||| |||||||| || || || |||
Sbjct 15347 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCGCAGACAGAGACAGGTACCCCATACATG 15406
Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223
| ||||||||||| || ||||| || |||||||||| |||| || || ||
Sbjct 15407 CTCTACAAAGATTCCTGTAACCGGAAAAGCAACCAGCAGAACCTGGGAACGAT 15459
>seq85480
Length=19824
Score = 87.8 bits (96), Expect = 5e-12
Identities = 99/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548
|||||| || | || ||||| | || ||||| || ||||||||||| | ||| ||
Sbjct 17661 GAACGTGTTGTAGCTTTTGCCGCAGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCA 17720
Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608
|| || ||||| || ||||| | | | ||||| || || |||||||| || || | |||
Sbjct 17721 ATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAACGAACTTATT 17780
Query 22609 AGCCGAGATGAGG 22621
||| |||||||||
Sbjct 17781 AGCAGAGATGAGG 17793
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1300673375511000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |