Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq124007 96.9 9e-15 seq85480 87.8 5e-12 >seq124007 Length=20016 Score = 96.9 bits (106), Expect = 9e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || ||||||| |||||||| || || || ||| Sbjct 15347 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCGCAGACAGAGACAGGTACCCCATACATG 15406 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223 | ||||||||||| || ||||| || |||||||||| |||| || || || Sbjct 15407 CTCTACAAAGATTCCTGTAACCGGAAAAGCAACCAGCAGAACCTGGGAACGAT 15459 >seq85480 Length=19824 Score = 87.8 bits (96), Expect = 5e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||| || | || ||||| | || ||||| || ||||||||||| | ||| || Sbjct 17661 GAACGTGTTGTAGCTTTTGCCGCAGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCA 17720 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || || ||||| || ||||| | | | ||||| || || |||||||| || || | ||| Sbjct 17721 ATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAACGAACTTATT 17780 Query 22609 AGCCGAGATGAGG 22621 ||| ||||||||| Sbjct 17781 AGCAGAGATGAGG 17793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1300673375511000