Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_007767.1
Length=132959
Score E
Sequences producing significant alignments: (Bits) Value
seq48881 91.5 1e-13
seq12448 89.7 4e-13
seq33159 86.0 5e-12
>seq48881
Length=14873
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342
|||||||||||||| || || || || ||||| || ||||| ||| | || |||| ||
Sbjct 7616 AAAATGCAAATTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCC 7557
Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402
|||||||| ||| | || || || || ||||| || ||| ||||| |||
Sbjct 7556 AGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGAC 7497
Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462
||||| || || || | ||| ||||| || | ||||||| | || | | || ||
Sbjct 7496 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTAC 7437
Query 115463 AACATTCAAAAAGAGTCTAC 115482
||||| || |||||||| ||
Sbjct 7436 AACATCCAGAAAGAGTCGAC 7417
>seq12448
Length=17785
Score = 89.7 bits (98), Expect = 4e-13
Identities = 151/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342
|| ||||| ||||| || ||||| || || || || ||||| ||| |||| || ||
Sbjct 3545 AAGATGCAGATTTTCGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCC 3486
Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402
|| || | | | | |||||| || || ||||||||||| | || | ||
Sbjct 3485 TCGGATACAATAGAAAATGTAAAAGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTAAT 3426
Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462
||||||||||| || | ||| ||||| ||| | ||||||| || || | || ||
Sbjct 3425 CAGCAAAGACTGATCTTTGCAGGCAAGCAACTGGAAGATGGATGCACTGTGTCTGACTAA 3366
Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501
||||||||| | ||||| || | ||| | |||||||||
Sbjct 3365 AACATTCAACAGGAGTCCACCCTTCATCTTGTGTTGAGA 3327
>seq33159
Length=15523
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342
|| ||||| |||||||| ||||| || || || || ||||| ||| |||| || ||
Sbjct 2321 AAGATGCAGATTTTTGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCC 2262
Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402
|| || | | | | ||||| || || ||||| |||| | || ||||
Sbjct 2261 TCAGATACAATAGAAAATGTAAAGGCCAAGATACAGGATAAGGAAGAAATTCCTCCTGAT 2202
Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462
| | ||||||| || | ||| ||||| ||| | ||||||| || || | || ||
Sbjct 2201 CTGTAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGCACTGTGTCTGACTAC 2142
Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
||||||||||| ||||| ||| | ||| | ||||||||| | || || ||
Sbjct 2141 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 2092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424511987260000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |