Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq63810 109 5e-19
seq48881 102 8e-17
seq124007 91.5 1e-13
seq12448 87.8 2e-12
seq5492 86.0 6e-12
>seq63810
Length=35167
Score = 109 bits (120), Expect = 5e-19
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097
|| |||||||| || |||||||| ||| || ||||| || || ||||| |||||
Sbjct 27489 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCAGCTGTTTGCCG 27548
Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157
|| |||| || ||||||||||| || ||||| || |||||||| ||| || ||||
Sbjct 27549 GCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 27608
Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217
| | ||| | || || ||| ||| | || | ||| | ||| |||||||| | ||
Sbjct 27609 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTC 27668
Query 131218 TTTACGAAAATCTGCATG 131235
|| ||||| |||||||||
Sbjct 27669 TTCACGAAGATCTGCATG 27686
Score = 105 bits (116), Expect = 6e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097
|| ||||| || || |||||||| ||| || ||||| || || ||||| |||||
Sbjct 27717 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCAGCTGTTTGCCG 27776
Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157
|| |||| || ||||||||||| || ||||| || |||||||| ||| || ||||
Sbjct 27777 GCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 27836
Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217
| | ||| | || || ||| ||| | || | ||| | ||| |||||||| | ||
Sbjct 27837 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTC 27896
Query 131218 TTTACGAAAATCTGCATG 131235
|| ||||| |||||||||
Sbjct 27897 TTCACGAAGATCTGCATG 27914
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097
|| |||||||| || |||||||| ||| || ||||| || || ||||| |||||
Sbjct 27945 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCAGCTGTTTGCCG 28004
Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157
|| |||| || ||||||||||| || ||||| || |||||||| ||| || ||||
Sbjct 28005 GCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 28064
Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217
| | ||| | || || ||| ||| | || | ||| | ||| |||||||| | ||
Sbjct 28065 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTC 28124
Query 131218 TTTACGAAAATCTGCAT 131234
|| || || ||||||||
Sbjct 28125 TTCACAAAGATCTGCAT 28141
>seq48881
Length=14873
Score = 102 bits (112), Expect = 8e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065
||||||| | || |||||| || | || | ||||||||| || || |||||||| ||
Sbjct 7385 AGCCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAG 7444
Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125
| ||||| || || |||||||||||||| |||| | | ||||||||| || |
Sbjct 7445 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGG 7504
Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185
|||| || || || || ||| || ||| | | ||| | || ||| ||| ||| |
Sbjct 7505 GGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCA 7564
Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | ||| || || || || || || |||||||| |||||
Sbjct 7565 CCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAAATTTGCAT 7613
>seq124007
Length=20016
Score = 91.5 bits (100), Expect = 1e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 145675 TACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTT 145734
||| || || | ||||| |||||| |||||||| |||||||| || ||||| || |||||
Sbjct 15490 TACTATTTCTGTGCACAGATTGCTGCATTTGATCGTTCCCAGGTTCTGCTGGTTGCTTTT 15431
Query 145735 CCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCAC 145794
|| ||| || | || |||||||||||||| || || ||||| ||||| ||| |
Sbjct 15430 CCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACCTGTCTCTGTCTGCGACTCAAT 15371
Query 145795 GAT 145797
|||
Sbjct 15370 GAT 15368
>seq12448
Length=17785
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081
|| ||| | ||| | ||| ||||||| ||||||||| || || || |||| ||
Sbjct 3330 CAACACAAGATGAAGGGTGGACTCCTGTTGAATGTTTTAGTCAGACACAGTGCATCCATC 3389
Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141
|| || ||||||||||| |||| | | ||||| | ||||| ||||||||||| ||
Sbjct 3390 TTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGATTAGGAGGAATTCCTTCTTTATC 3449
Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201
||| || || | | || | ||||| | || || | |||| ||| | |||
Sbjct 3450 CTGGATCTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 3509
Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| || || || ||||| ||||||||||||||
Sbjct 3510 CTTCCCAGTAAGGGTTTTCACGAAAATCTGCAT 3542
>seq5492
Length=9153
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | | || ||| | ||| | || |||||||||||||||||||| || |
Sbjct 3828 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 3769
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||| | || || | |||||||| || |||| | | ||||| || |||||
Sbjct 3768 AAAGTGCACCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 3709
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|||||||| || || ||| || ||| | | || ||||| || || |
Sbjct 3708 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGTTCAACC 3649
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| ||| | ||| || || || || ||||| ||||||||||||||
Sbjct 3648 TCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCAT 3602
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471065824320000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |