Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq63810 118 9e-22 seq48881 102 7e-17 >seq63810 Length=35167 Score = 118 bits (130), Expect = 9e-22 Identities = 159/219 (73%), Gaps = 12/219 (5%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| ||||||||||| || ||||||||||||| || || |||||| Sbjct 27930 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGT----GCGTCC 27985 Query 16784 ----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839 |||| |||||||| ||| | || | |||||| ||||| || | ||||||||| Sbjct 27986 ATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTT 28045 Query 16840 GTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897 ||| || || || ||| || | | | ||||| | ||||||| |||| |||| Sbjct 28046 GTCTTGGATCTTGGC--CTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 28103 Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| || ||||||| || || ||||| ||||||||| Sbjct 28104 ATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCATT 28142 Score = 111 bits (122), Expect = 1e-19 Identities = 157/218 (72%), Gaps = 12/218 (6%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| ||||||||||| || ||||||||||||| || || |||||| Sbjct 27474 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGT----GCGTCC 27529 Query 16784 ----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839 |||| |||||||| ||| | || | |||||| ||||| || | ||||||||| Sbjct 27530 ATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTT 27589 Query 16840 GTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897 ||| || || || ||| || | | | ||||| | ||||||| |||| |||| Sbjct 27590 GTCTTGGATCTTGGC--CTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 27647 Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || ||||||| || || || || |||||||| Sbjct 27648 ATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27685 Score = 107 bits (118), Expect = 2e-18 Identities = 156/218 (72%), Gaps = 12/218 (6%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| |||||||| || || ||||||||||||| || || |||||| Sbjct 27702 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGT----GCGTCC 27757 Query 16784 ----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839 |||| |||||||| ||| | || | |||||| ||||| || | ||||||||| Sbjct 27758 ATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCTTT 27817 Query 16840 GTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897 ||| || || || ||| || | | | ||||| | ||||||| |||| |||| Sbjct 27818 GTCTTGGATCTTGGC--CTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 27875 Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || ||||||| || || || || |||||||| Sbjct 27876 ATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27913 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 12/219 (5%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| |||||| ||||||||||| || ||||||||||||| || || ||||| Sbjct 27245 CAGGACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGT----GCGTC 27300 Query 16783 C----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTT 16838 | |||| |||||||| ||| | || | || ||| ||||| || |||||||| Sbjct 27301 CATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGCTGCCCTCTT 27360 Query 16839 TGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGT 16896 |||| || || || ||| || | | | ||||| | ||||||| |||| ||| Sbjct 27361 TGTCTTGGATCTTGGC--CTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGT 27418 Query 16897 GATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| | |||||| || || || || |||||||| Sbjct 27419 GATGGACTGACCGGTCGAGGTCTTCACGAAGATCTGCAT 27457 >seq48881 Length=14873 Score = 102 bits (112), Expect = 7e-17 Identities = 155/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| || ||||| || || ||||||||||| | | || | | || Sbjct 7401 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATC 7460 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| ||||| || | |||||| || || Sbjct 7461 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATC 7520 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||||| ||||||| |||| ||||||| Sbjct 7521 CTGGATCTTGGC--CTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 7578 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || || ||||| || || || ||||| ||||||||| Sbjct 7579 GTCTTGCCCGTCAGGGTCTTCACGAAAATTTGCATTTTG 7617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404295609895000