Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq95845 134 2e-26 seq85480 129 7e-25 seq124007 100 4e-16 seq88024 96.9 4e-15 seq15580 86.0 8e-12 >seq95845 Length=12527 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 950 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATG 891 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 |||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 890 GACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 831 Query 62312 CTATTTCTAAGACCGTA 62328 |||||||| | ||| || Sbjct 830 CTATTTCTTATACCATA 814 >seq85480 Length=19824 Score = 129 bits (142), Expect = 7e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | |||||||||||||||||| || ||||| || || || || | Sbjct 17793 CCTCATCTCTGCTAATAAGTTCGTTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 17734 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| || ||||| || ||||||||||| |||||||||||||| ||||| | Sbjct 17733 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAG 17674 Query 32803 C 32803 | Sbjct 17673 C 17673 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||| | || || ||||| | ||||||||||| || ||||| |||||||| ||||| Sbjct 15901 ATCTTTGATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGTATGTTTTCCATGGC 15842 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 ||||| || || ||||| || | || || |||||||| |||||| Sbjct 15841 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCT 15796 >seq124007 Length=20016 Score = 100 bits (110), Expect = 4e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 14160 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 14101 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 || || || |||||||| ||||| || | ||| || ||| | | || || ||||||| Sbjct 14100 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 14041 Query 63187 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63219 || |||||||| || || | ||||||| || Sbjct 14040 AGGCTCCAAGTAAATAGCAAATGCTCCAGGTCG 14008 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 62432 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62491 || || || ||||| || | || || || || ||||| || || || || || || ||| Sbjct 18915 TAGGTTTCATATGGGCCATGCTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATAA 18856 Query 62492 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAA 62551 ||||||||||| ||||| | |||||| | || || || | || ||||| ||||| Sbjct 18855 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 18796 Query 62552 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62611 | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 18795 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACTCCAATTCCAATGGGGCGATGGCGT 18736 Query 62612 TTATTAGA 62619 ||||| || Sbjct 18735 TTATTTGA 18728 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| || ||||||||||| | || || || || || || || || | || Sbjct 2866 CACTGAACACTTTCTTCGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAAAA 2807 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 |||| || || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 2806 TGGCGTAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 2747 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 2746 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2701 >seq88024 Length=2735 Score = 96.9 bits (106), Expect = 4e-15 Identities = 177/257 (69%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 30404 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGATATTGTACTTCT 30461 ||| || || ||||| ||| ||| | ||| | |||| ||||| | ||| ||||| Sbjct 1808 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTTAGTGTA--ATCTAAAACTTGAACTTCC 1865 Query 30462 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 30521 | | ||| || ||| | || |||| | | || ||||| || |||| ||| ||| | || Sbjct 1866 TCTATTTCAGGGTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 1925 Query 30522 ACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 30581 || | || | ||| ||| ||||| || | || || |||||||| || |||||| Sbjct 1926 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCCATATTTCCTCTGTAATCT 1985 Query 30582 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 30638 |||||||| ||||| |||||| ||| || | |||| | || ||||| | ||| Sbjct 1986 TCGTCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGTAGCCAATCCAGAACGTGGA 2045 Query 30639 GCTATTCTACCATAGCA 30655 |||| ||| ||||| || Sbjct 2046 GCTACTCTTCCATAACA 2062 >seq15580 Length=3375 Score = 86.0 bits (94), Expect = 8e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || | ||| |||||||| ||||| || ||||| || || | || || Sbjct 3264 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTTTTCTTT 3323 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 32794 | ||| ||||| | ||||| ||||| || ||||||||||||||||| || Sbjct 3324 AACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGC 3373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632360775800000