Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq63810 145 7e-30 seq74389 114 1e-20 seq32806 105 6e-18 seq104951 93.3 4e-14 seq2401 87.8 2e-12 >seq63810 Length=35167 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || ||||| ||||| ||||||||||| ||||||| | || |||||| | Sbjct 28144 ACAATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCC 28085 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||| |||||| | ||| || ||| |||||||| || || || |||||| Sbjct 28084 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGAC 28025 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || |||||| | || |||||||||||||| | ||||||| |||||| || ||| ||| Sbjct 28024 CAGCAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTAC 27965 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || ||||| || || | || || | || ||||| || Sbjct 27964 AACATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGAGGGGG 27915 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||||||| ||||||| | || |||||| | | Sbjct 27913 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 27854 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| |||||||| || || || |||||||| Sbjct 27853 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAG 27794 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 |||||| | || |||||||||||||| | ||||||| |||||| || ||| ||||| Sbjct 27793 CAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAAC 27734 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| ||||| || || | || || | || ||||| || Sbjct 27733 ATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGAGGGGG 27687 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||||||| ||||||| | || |||||| | | Sbjct 27685 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 27626 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| |||||||| || || || |||||||| Sbjct 27625 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAG 27566 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 |||||| | || |||||||||||||| | ||||||| |||||| || ||| ||||| Sbjct 27565 CAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAAC 27506 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | || || | || ||||| || Sbjct 27505 ATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGAGGGGG 27459 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||||| | |||||||| | || |||||| | | Sbjct 27457 ATGCAGATCTTCGTGAAGACCTCGACCGGTCAGTCCATCACCCTGGAGGTGGAGCCCAGT 27398 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| |||||||| || | || |||||||| Sbjct 27397 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCAGCCCCCCTGACCAG 27338 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||||||||| | ||||||| |||||| || ||| ||||| Sbjct 27337 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAAC 27278 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || ||| | || || Sbjct 27277 ATCCAGAAGGAGTCCACTCTGCATCTGGTCCT 27246 >seq74389 Length=16610 Score = 114 bits (126), Expect = 1e-20 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || |||||||| | || | ||| | | Sbjct 10267 ATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACACTTGAGATCGAGCCCAGT 10326 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||||||| | || |||| |||||| |||| || || || ||||||||| Sbjct 10327 GACACTATCGAG--AATGTCAAAGC-TAAAATCCAACACAAGGAGGGCATCCCACCTGAC 10383 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | ||||||||||||||||| | || |||| |||||| | || || Sbjct 10384 CAGGAGCATCTGATTTTTGCCGGCAAACAGATGGAGGATGGCCGCACTCTCTCAGACTAT 10443 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || ||||| ||||| || || || ||||| Sbjct 10444 AATATCCAGAAAGAGTCCACTCTGCACTTGGTGCT 10478 >seq32806 Length=18495 Score = 105 bits (116), Expect = 6e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || |||||||| |||| |||||| | | Sbjct 13402 ATGCACATCTTTGTGAAGACCCTGACAGGCAAGACCATCACACTCGAGGTGGAGCCCAGT 13461 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| ||| | || |||| |||| || || || || || || ||||||||| Sbjct 13462 GATACTATTGAG--AATGTCAAAGCTAAAACCCAA-GATAAGGAGGGCATCCCACCTGAC 13518 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | ||||||| ||||||| | || |||| |||||| | || || Sbjct 13519 CAGCAGCGTCGGACTTTTGCCAGCAAACAGCTGGACGATGGCCGCACTCTCTCAGACTAA 13578 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || ||||| | ||| || || || ||||| Sbjct 13579 AATATCCAGAAAGAGTTCACTCTGCACTTGGTGCT 13613 >seq104951 Length=12537 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/217 (71%), Gaps = 9/217 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAG-TGGAGTCGTC 25057 ||||| || |||| || || |||| || || |||||||| || ||| | ||| | Sbjct 11243 ATGCAGATCTTTGGGAAAACCCTGACAGGCAAGACCATCACACTCAAAGGTCGAGCCCAG 11184 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||||||| || |||| |||| |||| || ||||| || || || ||||||| Sbjct 11183 TGACACTATTGAAAACGTCA---AAGCCAAAATCCAA-GACAAGGAGGGCATCCCACCTG 11128 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 |||| ||||| | ||||||| |||||||| | || |||| |||||| | || | Sbjct 11127 ACCAGCAGCGTCTGATTTTTGTGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACT 11068 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || | ||||| ||||| || || || ||||| Sbjct 11067 ATAACATCGAGAAAGAGTCCACTCTGCACTTGGTGCT 11031 >seq2401 Length=18371 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || | ||| ||||| | || || || ||||||| | || || | | | | Sbjct 145 ATGCAGATCTGTGTGAAGACCCTAACAGGCAAGACCATCACCCTTGAGGTCGGGCCCAAT 204 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| ||| | || |||| ||| || |||| || || || ||||||||| Sbjct 205 GACACTATTGAG--AATGTCAAAGCTAAACTCCAAA-ACAAGGAGGGTATCCCACCTGAC 261 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | |||||||| |||||||| | || |||| |||||| | || || Sbjct 262 CAGCAGCGTCTGATTTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTAT 321 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || |||| ||||| || || || ||||| Sbjct 322 AATATCCAGAAAGCGTCCACTCTGCACTTGGTGCT 356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432480369807500