Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq63810 145 7e-30
seq74389 114 1e-20
seq32806 105 6e-18
seq104951 93.3 4e-14
seq2401 87.8 2e-12
>seq63810
Length=35167
Score = 145 bits (160), Expect = 7e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|||||||| || ||||| ||||| ||||||||||| ||||||| | || |||||| |
Sbjct 28144 ACAATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCC 28085
Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|||||| |||||| | ||| || ||| |||||||| || || || ||||||
Sbjct 28084 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGAC 28025
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| |||||| | || |||||||||||||| | ||||||| |||||| || ||| |||
Sbjct 28024 CAGCAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTAC 27965
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || || || || ||||| || || | || || | || ||||| ||
Sbjct 27964 AACATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGAGGGGG 27915
Score = 140 bits (154), Expect = 3e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||||||||| ||||||| | || |||||| | |
Sbjct 27913 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 27854
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| | ||| || ||| |||||||| || || || ||||||||
Sbjct 27853 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAG 27794
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|||||| | || |||||||||||||| | ||||||| |||||| || ||| |||||
Sbjct 27793 CAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAAC 27734
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || ||||| ||||| || || | || || | || ||||| ||
Sbjct 27733 ATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGAGGGGG 27687
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||||||||| ||||||| | || |||||| | |
Sbjct 27685 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 27626
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| | ||| || ||| |||||||| || || || ||||||||
Sbjct 27625 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAG 27566
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|||||| | || |||||||||||||| | ||||||| |||||| || ||| |||||
Sbjct 27565 CAGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAAC 27506
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || || || ||||| || || | || || | || ||||| ||
Sbjct 27505 ATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGAGGGGG 27459
Score = 122 bits (134), Expect = 8e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | ||||||| | |||||||| | || |||||| | |
Sbjct 27457 ATGCAGATCTTCGTGAAGACCTCGACCGGTCAGTCCATCACCCTGGAGGTGGAGCCCAGT 27398
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| | ||| || ||| |||||||| || | || ||||||||
Sbjct 27397 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCAGCCCCCCTGACCAG 27338
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || |||||||||||||| | ||||||| |||||| || ||| |||||
Sbjct 27337 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAAC 27278
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || ||||| || ||| | || ||
Sbjct 27277 ATCCAGAAGGAGTCCACTCTGCATCTGGTCCT 27246
>seq74389
Length=16610
Score = 114 bits (126), Expect = 1e-20
Identities = 156/215 (73%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| ||||| || || |||||||| | || | ||| | |
Sbjct 10267 ATGCAGATCTTTGTGAAGACCTTGACGGGCAAGACCATCACACTTGAGATCGAGCCCAGT 10326
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|||||||||||| | || |||| |||||| |||| || || || |||||||||
Sbjct 10327 GACACTATCGAG--AATGTCAAAGC-TAAAATCCAACACAAGGAGGGCATCCCACCTGAC 10383
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||| | ||||||||||||||||| | || |||| |||||| | || ||
Sbjct 10384 CAGGAGCATCTGATTTTTGCCGGCAAACAGATGGAGGATGGCCGCACTCTCTCAGACTAT 10443
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || ||||| ||||| || || || |||||
Sbjct 10444 AATATCCAGAAAGAGTCCACTCTGCACTTGGTGCT 10478
>seq32806
Length=18495
Score = 105 bits (116), Expect = 6e-18
Identities = 154/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| |||| || || |||||||| |||| |||||| | |
Sbjct 13402 ATGCACATCTTTGTGAAGACCCTGACAGGCAAGACCATCACACTCGAGGTGGAGCCCAGT 13461
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| ||||| ||| | || |||| |||| || || || || || || |||||||||
Sbjct 13462 GATACTATTGAG--AATGTCAAAGCTAAAACCCAA-GATAAGGAGGGCATCCCACCTGAC 13518
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| | ||||||| ||||||| | || |||| |||||| | || ||
Sbjct 13519 CAGCAGCGTCGGACTTTTGCCAGCAAACAGCTGGACGATGGCCGCACTCTCTCAGACTAA 13578
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || ||||| | ||| || || || |||||
Sbjct 13579 AATATCCAGAAAGAGTTCACTCTGCACTTGGTGCT 13613
>seq104951
Length=12537
Score = 93.3 bits (102), Expect = 4e-14
Identities = 153/217 (71%), Gaps = 9/217 (4%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAG-TGGAGTCGTC 25057
||||| || |||| || || |||| || || |||||||| || ||| | ||| |
Sbjct 11243 ATGCAGATCTTTGGGAAAACCCTGACAGGCAAGACCATCACACTCAAAGGTCGAGCCCAG 11184
Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
||||||||| || |||| |||| |||| || ||||| || || || |||||||
Sbjct 11183 TGACACTATTGAAAACGTCA---AAGCCAAAATCCAA-GACAAGGAGGGCATCCCACCTG 11128
Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173
|||| ||||| | ||||||| |||||||| | || |||| |||||| | || |
Sbjct 11127 ACCAGCAGCGTCTGATTTTTGTGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACT 11068
Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| || || | ||||| ||||| || || || |||||
Sbjct 11067 ATAACATCGAGAAAGAGTCCACTCTGCACTTGGTGCT 11031
>seq2401
Length=18371
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/215 (70%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || | ||| ||||| | || || || ||||||| | || || | | | |
Sbjct 145 ATGCAGATCTGTGTGAAGACCCTAACAGGCAAGACCATCACCCTTGAGGTCGGGCCCAAT 204
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|||||||| ||| | || |||| ||| || |||| || || || |||||||||
Sbjct 205 GACACTATTGAG--AATGTCAAAGCTAAACTCCAAA-ACAAGGAGGGTATCCCACCTGAC 261
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| | |||||||| |||||||| | || |||| |||||| | || ||
Sbjct 262 CAGCAGCGTCTGATTTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTAT 321
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || |||| ||||| || || || |||||
Sbjct 322 AATATCCAGAAAGCGTCCACTCTGCACTTGGTGCT 356
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 432480369807500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |