Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq85480 100 3e-16 seq92079 82.4 8e-11 >seq85480 Length=19824 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | ||||||||||||||||||||| |||||||| |||||| ||||||||| || Sbjct 17755 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAG 17696 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 || ||||| || || ||||| || |||| |||||| Sbjct 17695 ATTCCTTCTACTGCGGCAAAAGCTACAACACGTTC 17661 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| ||||| || || || | ||| |||||| |||||||| | || ||||| Sbjct 15903 GAATCTTTGATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGTATGTTTTCCATG 15844 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||||||||||| || |||||||| | ||||| || ||||| |||||||| Sbjct 15843 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTG 15794 >seq92079 Length=13920 Score = 82.4 bits (90), Expect = 8e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 ||||| ||||||||||| |||| || ||||| || || ||||||||||| || Sbjct 4832 ATCTCTGATGTATGTATCTATTAGCAAGCTGTACATCTCTGAGTGGACATTCTCGATAAG 4891 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 |||||| || || |||||||| | ||| || | | |||||| |||||| ||||| ||| Sbjct 4892 AATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGCACCTCTTGACTAAATCGCTC 4951 Query 93475 TAC 93477 || Sbjct 4952 CAC 4954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555743598020000